Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_031266.1 Length=44872 Score E Sequences producing significant alignments: (Bits) Value seq10339 190 6e-44 >seq10339 Length=11660 Score = 190 bits (210), Expect = 6e-44 Identities = 348/509 (68%), Gaps = 3/509 (1%) Strand=Plus/Plus Query 39279 GTGTTCGCCAACAACGACTGCGTTCACGAAACCGAGAGAATGGCAGACGATTCGGTGGAT 39338 ||| | | ||||||||||||||| |||| || | ||||| ||| |||| Sbjct 6459 GTGCTGGTCAACAACGACTGCGTGAACGAGACGCGCCGCATGGCCAGCGACAGCGTGGGC 6518 Query 39339 CTGATTGTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGAT 39398 ||| | | |||||||| || ||| || || ||||||||| |||| | || | ||| Sbjct 6519 CTGGTGCTGACCAGCATCCCCTTCAGCACGCAGTACGAGTACTCGCCCAACTTCGCCGAC 6578 Query 39399 TTCGGCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAG 39458 ||||||||||||||| ||||||||| |||| ||||||||||| ||| ||| || Sbjct 6579 TTCGGCCACACCGACAGCAACGCGCACTTCTTCCAGCAGATGGACTTCCTGGTGCCGGAG 6638 Query 39459 CTGCTGCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTG 39518 ||||||||| | || ||||||| | | |||| |||||||||| |||||||| || Sbjct 6639 CTGCTGCGCGTGCTGATGCCGGGCAGGGTGGCCGCCATCCACGTCAAGAACCGCATCGTG 6698 Query 39519 ---TTCGGCAACGTCACCGGCGCCGGCGTGCCCACCGTGTCCCCGTTTCACGCCGAGGCG 39575 ||||| || |||| |||| | | |||| || ||| || ||| || | Sbjct 6699 CCCAGCGGCATGGTGGAGGGCGTCGGCTTCCAGACCGAGTACCCCTTCGACGTGGACACC 6758 Query 39576 ATCTTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCGTAACCGAT 39635 ||| | | |||| ||||||| ||| | | ||| | ||| |||| ||||| Sbjct 6759 ATCGCCTGCTTCCGCCGGGCCGGCTTCCACTTCGTGGGCCGCAAGACCATCGTCACCGAC 6818 Query 39636 GTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGACGCC 39695 |||||||| || ||||||||||| ||||| ||||||| |||||| ||||| || | | Sbjct 6819 GTGGTGCGCGAGAACAACCAGACCTACCGCCTGGGCTACAGCGAGCAATGCAAGGATGGC 6878 Query 39696 ACCAAGATGGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCGCAAACAGAC 39755 | |||||| ||||| || ||| | ||| | |||| ||| | | || ||| Sbjct 6879 TCGCGCATGGGCTTCGGCATGTGCGAGTACCTGCTGATCTTCCGCAAGGCACCGACCGAC 6938 Query 39756 AGGTCCCGTGGGTATGCCGACGTACCGGT 39784 ||| || ||||||||||| || || Sbjct 6939 GCCAGCCGCGGCTATGCCGACGTGCCCGT 6967 Score = 149 bits (164), Expect = 2e-31 Identities = 299/430 (70%), Gaps = 15/430 (3%) Strand=Plus/Plus Query 37909 AGGTTGACCCGGGCGAGATTCACTCGATGTTGTTGCCGCACCAGCGCGATCTGGTGCGTT 37968 |||| |||| || ||| | || || || || |||||||||| || | |||| | Sbjct 5053 AGGTCGACCAGGCCGACGTCAACCCGCTGCTGAAGCCGCACCAGATCGCTGCGGTGATCT 5112 Query 37969 GGGCGGTC-GCCGGGGGTAGGCGCGCGATCTTCGCGGCGTTCGGCCTGGGCAAGACGGTG 38027 |||| || ||| ||| | ||| ||| | ||| ||| ||||||||||||||||| | Sbjct 5113 GGGCCATCCGCCTGGGCTGCGCG-GCGCTGTTCATGGCCTTCGGCCTGGGCAAGACCTTC 5171 Query 38028 ATGCAGCTGGAGATCGTGCGCCTGTCGCTAGCCAAGCATGGCGGTGGGCGAGGCTTGATC 38087 ||||| |||||||||||||| | || ||| |||| ||| || ||| ||||| Sbjct 5172 GTGCAGTTGGAGATCGTGCGCATCGTGCGTGCC-CGCAT--CGGCGGCATGGGCCTGATC 5228 Query 38088 GTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACGACGCCAACATG-CTGGGCATCGA 38146 || || |||||||||||||| |||||| || ||||| | || | || |||||| Sbjct 5229 GTCATCCCGCTGGGCGTGCGTCAGGAGTTCATCCGCGACG-CGGCACGCCTTGGCATCAC 5287 Query 38147 AACCCGGTTTGTTCGCCGCACAGAAGAAGTCGGCGGC---GACGGTATCTACCTCACCAA 38203 | ||| | ||||||| || |||| || || | |||| |||||||||||||| Sbjct 5288 GGTCAAGTTCATCCGCCGCATCGAGGAAGCCGACGACCCGAACGGCATCTACCTCACCAA 5347 Query 38204 CTACGAGAGCGTTCGCGATGGAAAGCTCGACCCGACACTGTTCACGGCCGTCTCACTCGA 38263 |||||| | | ||||| | ||||| |||||| ||||||| | | | || || Sbjct 5348 CTACGAAACGATCCGCGACCGCAAGCTGGACCCGCTGCTGTTCAGCGTGGCCAGCCTGGA 5407 Query 38264 CGAGGCGAGCGTG-CTGCGCTCGTTCGG-GTC--CAAGACGTACCAGTCGTTCCTCGAGC 38319 ||||||| || || |||||| ||||| | | |||||| | || |||| | | || Sbjct 5408 CGAGGCG-GCATGCCTGCGCGGCTTCGGCGGCAGCAAGACCTTCCGCGAGTTCATGGCGC 5466 Query 38320 TGTTCGACGG 38329 |||||| ||| Sbjct 5467 TGTTCGCCGG 5476 Score = 86.0 bits (94), Expect = 2e-12 Identities = 235/351 (67%), Gaps = 8/351 (2%) Strand=Plus/Plus Query 40006 TGTTCACCAAGTACAGCCTGCAGGATGTCTACGACTACCAGTCAC-ACGTCCGCATCGGT 40064 ||||| |||| || ||| || |||||||||| | || ||| |||| |||||||| Sbjct 7099 TGTTCCGCAAGCACTCGCTGGAGCGCGTCTACGACTTCGAG-CACGACGTGCGCATCGGC 7157 Query 40065 GAGCAACTCGAAGGTCGCGGTGCCCTGCCTGCCACGTTCATG--GCCATCGCCCCGGGAT 40122 ||| || | | ||||| ||||| |||| |||||| || ||| | | | Sbjct 7158 GAGGCGCTGGCCGAGCGCGGCATGCTGCCCACCACCTTCATGCTGCTGCAGCCGCAG-AG 7216 Query 40123 CGTGGTCACCTCACGTGTGGCACGACGTGAACCGGATGATCACCTTGAACGGGGAGCAGA 40182 | ||| || |||| ||| |||||||| || ||| ||| | ||| | | |||| Sbjct 7217 C-TGGCATCCGGACGTCTGGACCGACGTGACGCGCATGCGCACGCTCAACAGCGCGCAGT 7275 Query 40183 AACGCCGCAACGTCCAA-ATGCACGTGTGCCCCCTGCAGTTCGACATCGTTGATCGGCTG 40241 || || | | | |||||| ||||||| ||||||||||||| | || ||| | Sbjct 7276 CG-GCAGCCGGGCGCGAGATGCACCTGTGCCCGATGCAGTTCGACATTGCGGACCGGGCG 7334 Query 40242 ATCACTCGTTTCTCGAATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACC 40301 ||||| | | ||| | |||||| ||| | |||||| |||||||| ||| || Sbjct 7335 ATCACCCAGTACTCCATGAAGGGCGAGGAGGTCTACGACCCCTTCGGCGGCCTGATGACG 7394 Query 40302 GTGCCGTTGCGGGCTCTGAAACTTGGTCGCCGCGGCCGTGGTGTCGAGCTG 40352 ||||| | |||||| || || || || |||||||| || ||||||| Sbjct 7395 GTGCCCTACCGGGCTGTGCTGCTGGGCCGGCGCGGCCGCGGCTGCGAGCTG 7445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143444518981616