Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq4764 203 8e-48 seq2795 201 3e-47 >seq4764 Length=15780 Score = 203 bits (224), Expect = 8e-48 Identities = 325/459 (71%), Gaps = 12/459 (3%) Strand=Plus/Plus Query 15157 TCATACAATGAGCAGCGAGAATGGTGTTTTGCATGTGATAGGCGTGTTCAATGGCAAACT 15216 || ||| |||| || || | ||||||| ||||| | || ||||| ||||||| |||| Sbjct 11108 TCGTACCGTGAGTAGTGAAAGTGGTGTTCTGCATATTATTGGCGTATTCAATGACAAAAA 11167 Query 15217 ATCTACTATTGCCCATGAGTGCGCTCACATGGCATTCGATATCTGCTCA-AGGGTCGGTG 15275 || || | || ||||| ||||| || | || ||||||||||| ||| | || |||| Sbjct 11168 CTCGACATTAGCTCATGAATGCGCCCATGTTGCTTTCGATATCTG-TCATCGTGTTGGTG 11226 Query 15276 TTGATGTTGAACCAGGAAGAGCCAACGAGACTTACTGCTACTTAATGAGCAGGCTTGTTG 15335 | |||| |||| || || ||||| | |||||| | || ||||| | |||| Sbjct 11227 TGAATGTGAGTACAGGTGAGGCAAATGAGACATTTTGCTACCTGATAAGCAGATTGGTTG 11286 Query 15336 AGTTCTGCGAGCGACATATCAAAAAGCCGGAGTGACCCGGCTTGATTATTACTT----TT 15391 |||| |||||| | ||||||||||||||||||||||||||| | | |||||| | Sbjct 11287 AGTTTTGCGAGAAGCCTATCAAAAAGCCGGAGTGACCCGGCTT-AGTTTTACTTACCGCT 11345 Query 15392 TGCTGTCTGGAGTTCGCTTATCTAATACCCAGCCATTACCTGGCTTTGTTGTTGGTGGAA 15451 |||| | ||||||| ||||| | | |||| ||||| | || | ||||||||| | Sbjct 11346 TGCTATTGGGAGTTCTTTTATCAAGTTCCCAAGTGTTACCGGATTTAGATGTTGGTGGCA 11405 Query 15452 GCCTTTCGTTGTCCTTGACGGTGGCAAAATTGTCTTTCTTACCGCCTCGCGGGCCAACTT 15511 ||||||| ||| | || ||||| ||||| || | || ||||| || || || |||| Sbjct 11406 ATTTTTCGTTATCCCTTACAGTGGCGAAATTATCAGTTTTGCCGCCACGAGGACCTACTT 11465 Query 15512 CTTGGTATATTCCGCCGTTTTTTCCTGTGTTTTCACCTGGTTTTTTCGCCATGATATACC 15571 | | || || ||||| | || || || ||||| || || || || |||| || | | Sbjct 11466 CACGATAGATACCGCCATCCTTACCAGTATTTTCTCCGGGCTTCTTACCCATAAT-GATC 11524 Query 15572 TCAACA---TACACCCGTTATTGGGCGA-TTAAATATTG 15606 || | | | ||| || ||||| || | |||||||||| Sbjct 11525 TCCATATTGTTCACTCGATATTGAGCCAGTTAAATATTG 11563 >seq2795 Length=11366 Score = 201 bits (222), Expect = 3e-47 Identities = 411/598 (69%), Gaps = 16/598 (3%) Strand=Plus/Minus Query 38183 AATGGCTAACCTACGCAAAGAAGCGCGCGGCAGAGAATGCCAGGTACGTATTTACGGCGT 38242 |||||| || ||||||||||||||||| || ||||||| ||||| | || ||| | Sbjct 3919 AATGGCAAATCTACGCAAAGAAGCGCGGGGTCGAGAATGTCAGGTCAGAATACCGGGCAT 3860 Query 38243 ATGCAATGGCAACCCTGAAACTACAGTTCTGGCACATTACCGGATGGCTGGAATTTGCGG 38302 || || || ||| ||||| ||||||||| ||||||||||||||||| ||||| || Sbjct 3859 CTGTAACGGTAACAGCGAAACGGTAGTTCTGGCTCATTACCGGATGGCTGGCATTTGTGG 3800 Query 38303 AACTGGAATGAAGCCTGACGACCTGATCGGCGCATGGGCTTGTAGCGCGT-GTCACGATG 38361 | || ||||| || | || ||| | || |||||||| ||| || || ||||||||| Sbjct 3799 CATGGGGATGAAACCCAATGATCTGTTTGGGGCATGGGCGTGTT-CGTGTTGTCACGATG 3741 Query 38362 AAATCGACCGACGCACCCATAATCTCGACA-ACAAAGAC--GCCAGACTTTAC-CACCTC 38417 |||| ||||| | || | || |||| | | ||| || || | | ||| | Sbjct 3740 AAATAGACCGCAGAAC---GAGGCT-GACAGAGACCGACTATGCACACATGGCTCACTTA 3685 Query 38418 GAAGGCGTGATCAGGACGCAGGCGATACTGCTGAAGGAGGGGAAGATTAAGTCATGAAAA 38477 || || || ||||||||||| | ||| |||| |||||| |||||| | | |||||| Sbjct 3684 GAGGGTGTAATCAGGACGCAATCAATATTGCTATCGGAGGGTAAGATT-TGACGTGAAAA 3626 Query 38478 CATACCGAATAAAATTGCCGTGGCCTCCTTCAAACAACCGATATTGGCGACACTCAAGAG 38537 | ||| ||||||||||||||||||| || || | |||||| |||||||||| Sbjct 3625 CCTACAATTTAAAATTGCCGTGGCCTCCGACAGTTAATCACTATTGGAAACACTCAAGAT 3566 Query 38538 GGATCCACTAC--ATCAGCGATTGGGGAAAGCGATACCGGCGAGAAGTAATCGAAATAAT 38595 || |||||| ||||| || || | | ||||| | || | | | | || || Sbjct 3565 GG-GGCACTACATATCAGAGAAAGGCATTAAC--TACCGACAGCAAATCAGCAACATCAT 3509 Query 38596 TCAGCAACAACAGCTAGACCTTAAAATCACACCCCGCATCAGAATCACCATTCTCGCAGC 38655 |||||| ||| | || | || | | | ||||||||| ||||| || | || Sbjct 3508 TCAGCAGCAAAACCTCAGTATCAATACCCAATCCCGCATCAAAATCAAAATAGTTGCCAA 3449 Query 38656 ACCTCCCGATAACCGCAAACGCGACCTGGACAATCTACCAAAGGCCGTTTTTGACGCACT 38715 || || || | || | | ||||| || || || || || || ||||| ||| | || Sbjct 3448 TCCCCCAGACAGACGACAGAGAGACCTCGATAACCTGCCTAAAGCGGTTTTCGACTCGCT 3389 Query 38716 CACTAGTGCGGGCTTCTGGCTGGATGACGGCCAGATAGACGATATGCGCATCAAGCGC 38773 ||| ||| || |||||| |||||| ||| | || ||||| ||||||| ||| Sbjct 3388 GACTCATGCTGGATTCTGGGCTGATGACAATCAGGTTGATTATATGAGCATCAAACGC 3331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129274117621720