Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_000929.1 Length=36717 Score E Sequences producing significant alignments: (Bits) Value seq2557 170 4e-38 seq2595 120 7e-23 >seq2557 Length=24734 Score = 170 bits (188), Expect = 4e-38 Identities = 289/416 (69%), Gaps = 6/416 (1%) Strand=Plus/Minus Query 35098 ATTGGCTATGTAAGGGTATCAACAAATGACCAGAATACAGACCTGCAACGAAACGCTCTT 35157 ||||||||| | || |||||||||| ||| ||||||| || ||||| |||| || || Sbjct 21620 ATTGGCTATATCAGAGTATCAACAAGTGATCAGAATAGTGATTTGCAAAGAAATGCA-TT 21562 Query 35158 GTTTG---TGCAGGATGTGAACAAATATTTGAAGATAAATTAAGCGGAACAAGGACAGAC 35214 | | | || |||||| || |||||||| ||| | || || | || | | Sbjct 21561 GACCGATATTCAC--TGTGAAATGATTTTTGAAGACAAAATCAGTGGGAGAACAGCCAAT 21504 Query 35215 CGACCGGGATTAAAACGCGCTTTAAAGCGCCTTCAAAAAGGTGACACACTGGTTGTCTGG 35274 || || ||||||||||| || ||||||| ||| || || || ||||||||||||||| Sbjct 21503 CGCCCAGGATTAAAACGTGCGTTAAAGCACCTGAAATTTGGCGATACACTGGTTGTCTGG 21444 Query 35275 AAACTGGATCGCCTCGGGCGAAGCATGAAACATTTGATTTCTCTCGTAGGGGAATTACGA 35334 || ||||||| || ||||| || | ||| || || | | || | ||| | | Sbjct 21443 AAGTTGGATCGTCTGGGGCGCAGTGTAAAAAATCTGGTGACACTAATTTCAGAACTGCAT 21384 Query 35335 GAGCGAGGGATTAATTTTCGCAGTCTTACTGACAGTATTGATACGTCATCTCCAATGGGG 35394 || | || ||| |||| | || || || |||||||||||||| | | |||||| Sbjct 21383 GAACAGGGAATTCATTTCCAGAGCCTGACGGACAGTATTGATACCAGTACCGCTATGGGG 21324 Query 35395 CGTTTTTTCTTCCACGTTATGGGTGCCCTGGCTGAAATGGAACGAGAACTAATTATCGAG 35454 || ||||||||||| || ||| | || ||||| ||||||||||| || | || |||| Sbjct 21323 CGGTTTTTCTTCCATGTGATGAGCGCACTGGCCGAAATGGAACGCGAGTTGATCGTCGAA 21264 Query 35455 CGAACGATGGCTGGACTTGCTGCCGCCAGAAATAAAGGCCGTATTGGTGGGCGACC 35510 |||| | || || || ||||| ||| || | | || | || || || ||||| Sbjct 21263 AGAACCAATGCAGGTCTGGCTGCTGCCCGACAACAGGGAAGGATCGGCGGACGACC 21208 >seq2595 Length=21780 Score = 120 bits (132), Expect = 7e-23 Identities = 215/312 (69%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 34566 GGCTGCTGGTTT-TTCG---TGTTGTAGTCTCGTCGCCAGCCAGGAGCATAAGCATCACC 34621 ||| | |||||| |||| |||| ||||| | || ||| | ||| ||||| | | ||| Sbjct 21612 GGCAGATGGTTTATTCGCAGTGTTATAGTCCCTTCTCCAACTTGGAACATAATCCTTACC 21553 Query 34622 ATGATTAATATAAGTGAATTGAGCGTTAGTGATTCCGCCGCCGCTGGACGTACTCGGCGT 34681 || || |||||| ||||||||||| | || | ||| | | || ||| | ||| Sbjct 21552 GTGGTTTCCATAAGTAAATTGAGCGTTCGGAATACAGCCATCTATTGATGTAGGAGCCGT 21493 Query 34682 AGTAACGCGTATGGTCATTGCGCCGCGAGTGCCAATAACTTCCACCACAGCACCTGCAAG 34741 ||||| || || |||||| | | | || || |||||||| |||||||| || | Sbjct 21492 TGTAACACGGATCGTCATTACACTTTCAAGCCCCATGACTTCCACAACAGCACCCGCTAA 21433 Query 34742 ACAAATATTTCCGCAACCTGTATCTGTAATGACCTTATTGTTTGCATAAGCCCATGAGCC 34801 ||| || || || ||||| || || | ||| | ||||| | ||| || || Sbjct 21432 GTGAATTGCACCACAGCCAGTATCAGTGATTCTTCTGTTGCTCGCATATGACCACGATCC 21373 Query 34802 TTTGCACATCCAGTAAGGATGGTTAAATGCCCCCTGACTCTCCAGCCACGAAATAAATTG 34861 ||| |||||||||||||| |||||||| || | | ||| | ||||| | |||||| | Sbjct 21372 TTTACACATCCAGTAAGGGTGGTTAAAAGCATCTTTACTTTTTAGCCATGCAATAAACTC 21313 Query 34862 TGCGGTTGTCCA 34873 | | |||||||| Sbjct 21312 TTCAGTTGTCCA 21301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117368808151072