Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_000935.1 Length=36524 Score E Sequences producing significant alignments: (Bits) Value seq2565 333 6e-87 >seq2565 Length=10326 Score = 333 bits (368), Expect = 6e-87 Identities = 986/1510 (65%), Gaps = 19/1510 (1%) Strand=Plus/Plus Query 33209 GCTCAGGTCGTCAAACTCTTCAACGGAAGCCACACCTCCCCCTGTGAAAGCATCGCCATC 33268 ||||||||| |||||||| || || || || || || || |||| ||| ||||| ||||| Sbjct 657 GCTCAGGTCATCAAACTCGTCCACTGACGCGACCCCACCGCCTGCGAATGCATCACCATC 716 Query 33269 TCTGAAAAACTGAACACCTCTTAATGAGGCTGAAACCCCTTTACCATTGTTGTCATAGCC 33328 | ||| ||||| || || | | ||| || || | |||||||| ||||| || || | Sbjct 717 GCGGAAGAACTGCACCCCGCCGAGTGAAGCCGAGATACCTTTACCGTTGTTATCGTAAGC 776 Query 33329 GTAAAATTCA-ACGGTGGCGTTCACGTAGCAGCCAGAGTAGGGACGACCATCCTGTGCTG 33387 ||||| | | ||||||||| || || ||||| |||||||| | |||||||| || | Sbjct 777 A-AAAATACTGATGGTGGCGTTAACATAACAGCCGGAGTAGGGTCTGCCATCCTGAGCGG 835 Query 33388 TTAACGGGGAGGTGTTACGGTCAATGACTAATGGGCGGGATTTGTTACTGGCGCTGAGGT 33447 | | || | | || ||| ||||| || ||||| | | |||||||||||| | | Sbjct 836 TCAGAGGTGTGCGGTCACGATCAATTACCAATGGCCTTGCTTTGTTACTGGCCGAAATAT 895 Query 33448 ACAGGTTTCCGGCGTAACCGTCGTACTCT---TTACTATCCCCATCGCGTAAGCAAAAAC 33504 ||| || || || ||||| || || || ||| ||||||||| || || ||| | Sbjct 896 ACATGTGGCCTGCATAACCATCATAATCAGGCTTATCATCCCCATCACGGAAATTAAAGC 955 Query 33505 GGTTAGGATTATTACAAATGCTGTTATAGATTTTTTCGATATCCTTGTTGCCCCATTTTT 33564 | | ||| | ||| | || | || | || | || ||||||||| | Sbjct 956 GCATGTTATTGCCCCGGATGGTTTTCAAAATGCCTGCGG---CTTTAGCGCCCCATTTAT 1012 Query 33565 CGCCAATCACGTGTTTGATACCGGCTTTGATTTCCTCAATCAGGTCTGTACGACTTTTGG 33624 || | ||| | ||| | |||| ||||| ||| | ||| | || ||| | Sbjct 1013 CGGTAGCCACTTTGAGGATGGCAGCTTCTATTTCGGCAACTAACTCTTTGCGCTCTTTAG 1072 Query 33625 GGATAAGAAAATTGGCGCGGTATTTGAACGCCCCTTGACCACTGACTTGCGTAGGTTCAA 33684 | ||||| ||||| | ||||||||| || | ||||||||| | ||||| || | ||| | Sbjct 1073 GAATAAGGAAATTTGAGCGGTATTTAAAATCGCCTTGACCATTAACTTGTGTTGCTTCGA 1132 Query 33685 ATAACTCAGGAAAAGCCAGACGTACGTTGTTTAATTTGATTTTCATAAAGTTACCTTTTG 33744 |||| ||||| || |||||||| ||||| || || | |||||||| |||||||| Sbjct 1133 ATAATTCAGGGAATGCCAGACGCACGTTTTTCAAACTAATTTTCATGGTTCTACCTTTTT 1192 Query 33745 ATTAAATGGATTT-ATC---AACGAGTGCCGCTTCGGTCACATCGTCAAAGTCGTTTAAG 33800 ||| | ||| ||| |||||| || | |||| || |||||||| || |||| Sbjct 1193 ATTGTTTAGATAAGATCGGCAACGAGCGCATCATCGGATACGTCGTCAAAATCATTTATA 1252 Query 33801 GGGGTAGTAATAATGGCAGGTCTTGGGTCCGATTCCGGTGCGATAACGGGTTTACCGTCT 33860 ||| | | | || || | ||||| ||||| | | | | || |||||||| Sbjct 1253 GGGTTGATGTCCAGTGCTGGACGAGGGTCAGATTCTGATACTACGGTAGGCTTACCGTCA 1312 Query 33861 GCTCGCTCGATAAGCGCTTCCAGTTTTGCCCATCGATGTGGTTTGTCTTTTTTAAGGAGT 33920 | || ||| || | ||||||||| ||||| | || | |||||||| || | Sbjct 1313 GTCCGTGTGATGAGTGTTTCCAGTTTGGCCCACTTCTTCGGATACTCTTTTTTCAGCACC 1372 Query 33921 TTCTCAGCCTGGGGTGGGCTGATAATTTTCTTGTGGTAAATTTGCTCCTGTTTAAGTTTG 33980 || || ||||| | ||||||||| | |||||| ||| || || || || || |||||| Sbjct 1373 TTTTCTGCCTGCGTTGGGCTGATTAACTTCTTGGTGTACATCTGGTCTTGCTTGAGTTTG 1432 Query 33981 GCGCCTTTTAACAGGGTTTCGGCTTCACGTTCATCACCCCAGGTGCGATTACCCTGTTTG 34040 ||||||||||| | |||||| || ||| |||||| | || ||||| || || Sbjct 1433 AAGCCTTTTAACATCGCTTCGGCGTCTGTTTCGATACCCCAAGCCCGGTTACCTTGCTTA 1492 Query 34041 CCGGTAACCAGTTTAAAGCCAGGTACCGATTGCCCCGTATGTAATGCCTCGGCGACCCGA 34100 || |||||||||||||| || || | || |||| || | | | || ||| ||| Sbjct 1493 CCTTCTACCAGTTTAAAGCCGGGGACGGGATGGCCCGCATTGAGTTCATCACTGACTCGA 1552 Query 34101 TTTCGCAGGGCTTTACAAAAACTCTCTATCAAATCGACATGCGGGTAGAGTTTTGCCATT 34160 | || | ||| || || | | || | ||||| || |||| || | ||| | Sbjct 1553 ATCCGAACGGCCTTGCACCAGCCTTCGACAAAATCAACCTGCGCATATTTGTCTGC--TA 1610 Query 34161 TTTTCAGGGGTTAGTAGCGTAATGCGTTTT--GGTGCATCGCTTAATTGTGGTGCCAGCG 34218 | ||||| | |||| | | | |||| ||| | ||| || || | | || Sbjct 1611 ATGTCAGGCTGTCGTAGTGGGGTACTTTTTCCTTTGCGTTCTGTAACTGAGGCTCTAACG 1670 Query 34219 GTTGGGTTAAATCGACAAAATCGCCTTTGACTTCATTATGGACGAATTGCGCCTGGGCGA 34278 | ||||| | |||| |||| || | || ||| || || | | |||| Sbjct 1671 GCTGGGTCAGATCGTCAAAGTCATCCAAGAGGGTATTCATCACATGCTGGGTCAGGGC-- 1728 Query 34279 AACACAATCCACCCTTCGCTTTACAAAACAGGCATTGCTTGACGCCTGGTGAAAAGGCAC 34338 |||||| | | ||||| |||||||| | ||||| || ||||||| | || | | Sbjct 1729 TTCACAAT-TAGCTTTCGCCTTACAAAATCGACATTGTTTTTCGCCTGGGGTGAACGAAT 1787 Query 34339 TATCCGGTAGGGCATCGAGACCACTGCGCTCGGCAAGGGTTGCCATCTTCATGGCTTTTT 34398 | |||| | |||| ||| | | ||||| | | ||| || | Sbjct 1788 CCTGGGGTAACGTTTCGACACCTTCACATTGGGCAATATTGAAGGTGACAATGACTAATG 1847 Query 34399 GCGCGCCTGATTTAGCCTGTTCGCCAAAGTCTTTTAAGTCCTCAACTGATACTGCCCATT 34458 ||| || ||| || || |||||||| | ||| || ||||| || | ||||| Sbjct 1848 CAGCGGCTTCTTTGGCTTGCTCGCCAAATTGCCGTAAATCTTCAACGCTGACCGACCATT 1907 Query 34459 CAGACAGATGGTTAAGTCTGGGCTGATGAATAAAAAGACGAACCGTTTTAAAATCATAAA 34518 | || | ||||| | | ||||| || || || | || || || | ||| ||||| | Sbjct 1908 CTGAAACGTGGTTCAAGCGTGGCTGGTGGATGAACAAGCGCACGGTCTCAAATTCATACA 1967 Query 34519 CAAGGTCAAACTGATGTAAAGCGCCCAGCGCATAAAGCATGAGCTGCTCATTGTTCTGGG 34578 | |||||||||| | || |||| || || ||||| | ||||| || || | Sbjct 1968 ACATCTCAAACTGATCCAGCGCACCCAATGCGTATAGCATCAATTGCTCGTTACCCTCCG 2027 Query 34579 CATCCACTTTAACGCCTTTACCATATTTTAGGTCATGAATTTGTAGTTCATCACTACTTA 34638 | | || || ||||| ||||| ||||| ||||||||||||||||| || | || | | Sbjct 2028 CGTAAACCTTCACGCCCTTACCGTATTTCAGGTCATGAATTTGTAGCTCGTTACCGTTAA 2087 Query 34639 CGATAATTGCATCTGCGGTGCCAAACGAATTATCTACGCCAATGACCGCTGAAAAGTCCA 34698 || || |||||||| || || || || || || || ||||| || | ||||| || | Sbjct 2088 TAATGATGGCATCTGCTGTACCGAAAGATTTCTCGACCCCAATCACATCAGAAAAATCGA 2147 Query 34699 CCCGTTCTTC 34708 | || | ||| Sbjct 2148 CACGCTGTTC 2157 Score = 111 bits (122), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 36253 CTGCCAGTGTTGCCCTTTCACGACCGTTATTCTTTACGAAACGGGGCTAATCTTCTCGCC 36312 ||||||||||| ||| ||| || |||||| || | ||| ||||||| || | | Sbjct 4816 CTGCCAGTGTTCCCCGTTCGCGCCCGTTACTCACTCTCGTGCGGAGCTAATCATCCCATC 4875 Query 36313 AACCGGATCGCGTTTGGCGGTACATCGCATT---TTATGCGCAGGGGTCTCAACAGAAAA 36369 |||||||||||| | ||||||||||| | | |||| |||||||| ||||| | Sbjct 4876 GACCGGATCGCGTCCGATGGTACATCGCAGTACTTCATGCATAGGGGTCTAAACAGTAGG 4935 Query 36370 ATCTGTGCTGTTCCGACTTTCTAAATTGTTAAAGAGC 36406 ||||||||||||||||| |||||||||||||||| Sbjct 4936 GAGTGTGCTGTTCCGACTTTATAAATTGTTAAAGAGC 4972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116751229155648