Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq2270 183 9e-42 seq2629 140 1e-28 seq2766 98.7 3e-16 >seq2270 Length=26257 Score = 183 bits (202), Expect = 9e-42 Identities = 472/710 (66%), Gaps = 28/710 (4%) Strand=Plus/Minus Query 16294 TTTAAACCGGCATACAGCAACAACATGGCCTGGTGTCTGTGGGATATGCTGACCCATCCG 16353 ||||||||||| |||| ||| ||| ||| ||| | | ||| || |||||||| | Sbjct 5165 TTTAAACCGGCCTACACCAATAACCCGGCGTGGATATTCTACGATTTGGTGACCCATACC 5106 Query 16354 CGCTACGGCATGGGGAAACGTCTTGGTGC-GGCGGATGTGGATAAATGGGCGCTGTATGT 16412 || || ||||| || || | | || || || ||| || || | || ||||||| Sbjct 5105 CGTTATGGCATCGGCAAGCTGATGGGGGCATTTGGCTGT-GACAAGTTCGCCCTGTATGC 5047 Query 16413 CATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCAT 16472 ||| | || || || |||||| |||||||| || ||||| ||||| || || ||| | Sbjct 5046 CATTGCGCAATATTGTGACCAGCTCGTGCCGGATGGATTTGGTGGCACCGAACCCCGCTT 4987 Query 16473 CACCTGTAATGCGTACCTGACCACACAGCGTAAGGCGTGGGATGTGCTCAGCGATTTCTG 16532 ||||| ||||||||| | ||| || |||||||| |||||||||| ||||| Sbjct 4986 TACCTGCAATGCGTACATCGCCAATCAACGTAAGGCACGGGATGTGCTGGATGATTTGGC 4927 Query 16533 CTCGGCGATGCGCTGTATGCCGGTATGGAACGGGCAGACGCTGACGTTCGTGCAGGACCG 16592 ||||| | | || |||||| ||| |||||||||| | ||||| | | | |||||||| Sbjct 4926 CTCGGTGTTTCGGGGTATGCAGGTCTGGAACGGGCTGCAACTGACCTGCTTTCAGGACCG 4867 Query 16593 ACCGTCGGATAAGACGTGGACCTATAACCGCAG-TAATGTGGTGATGCCGGATGATGGCG 16651 || | ||| | ||||| | | ||| | |||||||| || ||| Sbjct 4866 GCCTGCCGATCCGGTCTGGACAT-TCACCAATGCCAATGTGGT---------CGAGGGC- 4818 Query 16652 CGCCGTTCCGCTACAGCTTCAGCGCCCTGAAGGACCGCCATAATGCCGTTGAGGTGAACT 16711 || |||||| | |||| ||| | ||| |||| | |||| |||| | Sbjct 4817 --AAATTTAACTACAGTGCCGCCGCCAAGAAAGCCCGGCATACGGTGATTGAAGTGACGT 4760 Query 16712 GGATTGACCCGAACAACGGCTGGGA-----GACGGCGACAGAGCTTGTTGAAGATACGCA 16766 || | ||||| ||||||||||| | |||| || || || || ||| ||| Sbjct 4759 GGGTCAACCCGGACAACGGCTGGAAAGAAGAACGGGAACTGA--TTCAGGATGATGCGCT 4702 Query 16767 GGCCATTGCCCGTTACGGTCGTAATGTTACGAAGATGGATGCCTTTGGCTGTACCAGCCG 16826 || ||| ||| | || | || |||| ||| || || |||||||||||||| || Sbjct 4701 GG---TTGACCGGTTGGGCCTGAACGTTAAAAAGGTGACCGCGTTTGGCTGTACCAGTCG 4645 Query 16827 GGGGCAGGCACACCGCGCCGGGCTGTGGCTGATTAAAACAGAACTGCTGGAAACGCAGAC 16886 ||||||||||||||| | ||| | |||| | ||| ||||||| ||| |||||| | | Sbjct 4644 GGGGCAGGCACACCGGGTCGGTCGGTGGATCATTGAAACAGAGAAGCTCGAAACGGATTC 4585 Query 16887 CGTGGATTTCAGCGTCGG-CGCAGAAGGGCTTCGCCATGTACCGGGCGATGTTATTGAAA 16945 ||| ||||| ||| ||| ||||| || | | ||||||||| || | || | Sbjct 4584 GGTGACGTTCAGTACCGGTCGC-GAAGGCATTAACTGCATTCCGGGCGATATTGTGGACA 4526 Query 16946 TCTGCGATGATGACTATGCCGGTATCAGCACCGGTGGTCGTGTGCTGGCG 16995 | |||| | || || | | | ||| ||| || || || |||||| Sbjct 4525 TTGCCGATAACAGCTTCGCGGCTGCCCGCATCGGCGGACGGGTACTGGCG 4476 Score = 87.8 bits (96), Expect = 6e-13 Identities = 192/285 (67%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 14315 GAGATTGTGGCGCTGGTCCACAGCCACCCCGGTGGTCTGCCCTGGCTGAGTGAGGCCGAC 14374 ||||||| ||| | || |||||||| || |||| ||| ||||||| | ||| Sbjct 7023 GAGATTGAGGCCATTGTGCACAGCCATCCTAACGGTCAACCCCATCTGAGTGCCGAAGAC 6964 Query 14375 CGGCGGCTGCAGGTGCAGAGTGATTTGCCGTGGTGGCTGGTCTGCCGGGGGACGATTCAT 14434 || || | |||| | | | ||||||||||| ||||||| | | | | ||| Sbjct 6963 CGCCGACAGCAGATAAAAACCAGGCTGCCGTGGTGGTTGGTCTGTGGTGATCGGGTGCAT 6904 Query 14435 AAGTTCCGCTGTGTGCCGCATCTCACCGGGCGGCGCTTTGAGCACGGTGTGAC-GGACTG 14493 | ||||| ||||||| | | ||||| ||| ||||| || || ||| || Sbjct 6903 CAATTCCGACCGGTGCCGCGTTTATTGGGGCGCGAATTTATCCACGG-GTTACAGGATTG 6845 Query 14494 TTACACACTGTTCCGGGATGCTTATCATCTGGCGGGGATTGAGATGCCGGACTTTCATCG 14553 ||| | ||| |||||||||| || |||||||||||||||||| | || ||| || Sbjct 6844 CTACTCGCTGATCCGGGATGCCTACCATCTGGCGGGGATTGAGTTAGACGATATTCCCCG 6785 Query 14554 TGAGGATGACTGGTGGCGTAACGGCCAGAATCTCTATCTGGATAA 14598 ||| || | |||||| | || ||||| || ||||| ||||| Sbjct 6784 TGATGAAGCATGGTGGAACACGGGGCAGAACCTGTATCTCGATAA 6740 >seq2629 Length=15125 Score = 140 bits (154), Expect = 1e-28 Identities = 122/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 42624 GATAAACTTAAGATTCGAAAACTCGCCTTAAAGCCCCGCAGTTACTGGATTAAACAAGCC 42683 |||||||| || || || | || |||| ||||||||||| |||||||||||||| Sbjct 152 GATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTTATTGGATTAAACAAGCA 93 Query 42684 CAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCGCGACTTACCATGTATCTCGTGC 42743 ||||||||||| ||||| | ||||||||||||||||| || || ||||| || || ||| Sbjct 92 CAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATTTGCCATGCATATCATGC 33 Query 42744 GGAACGCTCACGTCTGCTCAGTGGGATGCCGG 42775 |||||| | ||||||||||||||||| || Sbjct 32 GGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 Score = 87.8 bits (96), Expect = 6e-13 Identities = 177/259 (68%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 41402 GGCGCGTTCTGCACTGACAGATTAAAACTCGTTCCCTTCACCAAATACTGTGATGACCAT 41461 || ||||||||||| | | ||| || ||| ||||||||||||| | || | Sbjct 13063 GGTGCGTTCTGCACAAGGGAAATGAAATTCAATCCAGTCACCAAATACTGCAAAGATAAC 13122 Query 41462 TTCGGGCGAGGGAATTACACCACGTGGATTGGCATCAGAGCTGATGAACCGAAGCGGCTA 41521 || | |||| | || || |||||||| || |||| ||||| | || | || Sbjct 13123 TTTGAT-----GAAT-ATACGACATGGATTGGAATACGAGCAGATGAGCAAAATAGATTA 13176 Query 41522 AAGCCAAAGCCTGGAATCAGATATCTTGCTGAACTGTCAGACTTTGAGAAGGAAGATA-T 41580 ||||||||| ||| || | ||||| ||||| | |||||||| ||||| |||| | Sbjct 13177 AAGCCAAAGGATGGCATTAATTATCTAGCTGATATTAGTGACTTTGAAAAGGATGATATT 13236 Query 41581 CCTCGCATGGTGGAAGCAACAACCATTCGATTTGCAAATACCGGAACATCTCGGTAACTG 41640 || | |||||| |||| || |||||||| | || || || || |||||||| || Sbjct 13237 AATCAC-TGGTGGTCAAAACAGCCTTTCGATTTAAACATTCCTGAGCACCTCGGTAATTG 13295 Query 41641 CATATTCTGCATTAAAAAA 41659 | | || ||||| || ||| Sbjct 13296 CGTTTTTTGCATCAAGAAA 13314 >seq2766 Length=35022 Score = 98.7 bits (108), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 8340 GGCGCGTTTATTCAGCAACTGAAAAATGGCCGGTGGCATGTCATGCAGCGTGTGGCTGGG 8399 || |||||||| ||||||||||| |||||||| |||||||||||||| || || |||| Sbjct 15012 GGTGCGTTTATCCAGCAACTGAATAATGGCCGCTGGCATGTCATGCAACG---GGTTGGG 14956 Query 8400 AAAAACCGTTACCCCATTGATGTGGTGAAAATCCCGATGGCGGTGCCGCTGAC 8452 |||| ||| || || ||||| || || ||||| ||| | || |||||| || Sbjct 14955 AAAAGCCGATATCCGATTGAAGTTGTCAAAATTCCGTTAGCAAAGCCGCTAAC 14903 Score = 82.4 bits (90), Expect = 2e-11 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 14687 AATCACGCCGCAATTTACTGCGGCGACGGCGAGC-TGCTGCACCATATTCCTGAACAACT 14745 |||||||||||||| |||| || || || | | | || ||| | || | ||||| Sbjct 8070 AATCACGCCGCAATCTACTTAGGGGAACA-GACCATTTTACATCATGTCCCGAATCAACT 8012 Query 14746 GAGCAAACGAGAGAGGTACACCGACAAATGGCAGCGACGCACACACTCCCTCTGGCGTCA 14805 |||||| |||||| || | ||| | |||||| ||| || ||||| | |||||| | Sbjct 8011 GAGCAAGCGAGAGGTTTATAACGAAAGATGGCAACGAATGACTCACTCGATTTGGCGTTA 7952 Query 14806 CCGGGCATGGCGCGCATCTGCCTTTACGGGGATTTACAACGATTTGGTCGCCGCATCGA 14864 ||| |||| |||| | |||| |||||||| ||||||||||| || || |||| Sbjct 7951 CCGAAACTGGCAACCATCCGATTTTATGGGGATTTGCAACGATTTGGCCGTCGATTCGA 7893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155079525565952