Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_001609.1 Length=11624 Score E Sequences producing significant alignments: (Bits) Value seq2611 500 6e-138 seq2660 78.8 7e-11 >seq2611 Length=12675 Score = 500 bits (554), Expect = 6e-138 Identities = 866/1248 (69%), Gaps = 14/1248 (1%) Strand=Plus/Plus Query 2709 ATCCAAATAATCAGCCCACCACTGCATCATTAAACGCCGCTCATCCAAATGCTCGGAGGT 2768 ||||| |||||| ||||||||||||| ||| | |||||||| |||||||||| ||||| Sbjct 11305 ATCCAGATAATCCGCCCACCACTGCACCATCAGCCGCCGCTCTTCCAAATGCTTAGAGGT 11364 Query 2769 ATGGATATATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAGTTGCCTCTCTATCGC 2828 || ||||| || || | || || || | || ||||| | ||| | ||||||||| Sbjct 11365 GTGAATATAGGCGGCCCTGACCTTTTTTCTTTCGATATGGCTTAATTGGCGCTCTATCGC 11424 Query 2829 GTCATCACTCCATAACCCCGACTCCCCCAACGCACCACGCGCCATAGTCCTAAACCCATG 2888 ||||| ||||||| ||||| ||||||| ||||| || ||||| ||||| || || || Sbjct 11425 ATCATCGTTCCATAATCCCGATTCCCCCATTGCACCCCGTGCCATTGTCCTGAATCCGTG 11484 Query 2889 CCCACACACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGCGCTGTTTACCGTGTT 2948 |||||||| ||||||| || ||||| ||||| |||| || || | || || ||||| Sbjct 11485 TCCACACACTTCGGTTTGGGTGTCATAACCCATGACACGTAAGGCATTATTCACAGTGTT 11544 Query 2949 TTCACTCATAACCTTAGTTGCGTCATGATCCCCCGGAAAAAGCAGCTCTTTATCACCACT 3008 ||||||||| || || | | ||||| | || || | || ||| | | ||||| Sbjct 11545 TTCACTCATGACTTTCATCGAATCATGGTTGTTGGGGAACATCACCTCACAACCGCCACT 11604 Query 3009 AATCTGCTTTAACTGGTTTAATAAAATC-ATCGCCTGTCGACTAAGCGGAACGATATGTT 3067 || | | | | | ||| |||| | | | ||||| || || || || || || || | Sbjct 11605 GAT-TCCATACAGGGTTTTGATAAGAGCGACAGCCTGACGGCTCAGTGGCACAATGTGCT 11663 Query 3068 CCTCTTTCATCTTCATGCCTCGGTACGAATAACGCACACCTTTAAT-TTCTTCTCGCTTT 3126 | |||||| |||||||| || | || | | || |||||||| |||| | | Sbjct 11664 CGGTTTTCATTTTCATGCCACGTTCAGAGAATCTGACGCCTTTAATGGGCTTC-CTTGTG 11722 Query 3127 GCAGGTATACGCCAAAGAGATTTATCGAAGTCGAATTCATCCCAACGTGCGAAACGTAAT 3186 || || || ||||| || | | | | ||||| ||| ||||| || || || ||||| Sbjct 11723 GCGGGAATTTTCCAAATAGCTCTTGCAAGGTCGATTTCTTCCCAGCGCGCAAACCGTAAC 11782 Query 3187 TCACTGGAACGCACAAAAGTTAGCAAGGAAAGCTTGACCGCAATCCGTGTCATTACACGG 3246 |||||||| || ||||| || || | | || | ||||| ||||| ||||||||||| Sbjct 11783 TCACTGGAGCGAACAAACGTGAGTAGCGTCAGTTCCACCGCGATCCGGGTCATTACACGA 11842 Query 3247 CCACGATATGCAGCAAGACGTGCAAGAAACTCAGGGAATCGGCTAGAAGGTAAAGCAGGG 3306 |||||||| || ||| || | ||||| ||||| || | | || | || || Sbjct 11843 CCACGATAACGAGAAAGGCGGGTGAGAAAATCAGGTAAACATTCATGGGGAAGGGCGGGA 11902 Query 3307 TAATGTCGCGCTTTGGTTGTCGATAGCGCACCAGCCATATCGCTGGCTGGATTTGAGTCG 3366 | ||| | || ||| | || || |||||||| || | || || || || || Sbjct 11903 TGATGATTGGATTGCACTGTGGTGAGAGCGCCAGCCATGTCATTAGCGGGGTTGGACTCA 11962 Query 3367 ATGTAATCGTTCTGTACGGCATAACGCATAATGGCTGTGACGCGCTGTTGCAGGCGCTGA 3426 | || ||||| || |||||||||||||||||||| || || ||||| | ||||| Sbjct 11963 AGAACGTCATTCTGGACAGCATAACGCATAATGGCTGTCACCCGTTGTTGTAATCGCTGG 12022 Query 3427 GCGACATCGTGTTTGCCACTGGCATCAACTTTTTTAATCGGGGCTAACAGGTGGCTGGTT 3486 ||| || || ||||| |||||||| ||| || |||||||| || ||||||||| Sbjct 12023 GCGGTGTCATGCTTGCCGTCAGCATCAACGGCTTTGATTGGGGCTAATAGCTGGCTGGTT 12082 Query 3487 -TTAAGCTGCCGAATGTCGGACGAACCGATATGAGGGAATATATAAAGCTCAAGATAGCG 3545 |||| | || | || ||||| ||||| || || |||||| |||||| | | | Sbjct 12083 CTTAATGTACC-TACATCAAGAGAACCTATATGGGGAAAAATATAATTCTCAAGGTTGTG 12141 Query 3546 AAGAACGCGCGATCGATGGTCTTCACTCCAGCGCTTGTTACTGGCATGCCATTCTCGGGC 3605 | || || | |||| || |||||| | || ||||| || |||||||| ||||| Sbjct 12142 TAACACCCGGTTACTGTGGTTTTTACTCCATTGTTTTTTACTAGCGTGCCATTCACGGGC 12201 Query 3606 GATAGCTTCAAAAGTATATGCCCCCGAATTC---TCGGCCCGAGCTTCTTTTTGTACGAC 3662 ||| ||| || | ||||| ||| ||| || | | ||| ||||| | | Sbjct 12202 GATGCGTTCGAAGGGGTATGCTCCC---TTCGATTCAGATTGTGCTCTTTTTTTCTCTGC 12258 Query 3663 TTTTGGGTCTATGCCCTGTACTAAAAGCTTTTTAGCTTCATCGCGTTTTGCTCTTGCCTG 3722 ||| || | || || ||||| | | ||| || ||||| || || || |||| ||| | Sbjct 12259 TTTGGGATTAATCCCTTGTACAATCAACTTCTTGGCTTCGTCTCGCTTGGCTCGTGCATC 12318 Query 3723 AGCAAGCGTCACAGTAGGCCAAACACCAAACGCAAGACGATCCTCTTTTTTGTCAGAGGG 3782 ||| || | |||| || | || ||||| || ||||| || ||||| || || | || Sbjct 12319 AGCCAGGGACACAACTGGATAGACGCCAAAAGCCAGACGGTCTTCTTTCTTATCGGTAGG 12378 Query 3783 ACGTCTGTATTTCATGCGCCAGTATTTGGAACCTTTGGCCGAAACCTCAAGATACAAACC 3842 || ||| ||||||||||| ||||| | ||| | | | ||||| ||||||| || Sbjct 12379 GCGGTAGTACTTCATGCGCCAATATTTAGCACCGTGTGAAGTGACCTCCAGATACAGGCC 12438 Query 3843 ACCACCATCGGCCATTTTGTAGGTTTTGTCTTTTGGCTTTGCGGTCTCGACCTGTCTGGC 3902 ||||| || | || ||| |||||||| ||||| || ||||| ||||||| |||| || Sbjct 12439 GCCACCGTCAGTCAGTTTATAGGTTTTCTCTTTGGGTTTTGCCGTCTCGATTTGTCGCGC 12498 Query 3903 GTTGAGCTTCATTT--GGGGGCACATTTCTAATCGAAGTTAAGATGCC 3948 |||||| ||||||| |||||| | || |||||||||| || |||| Sbjct 12499 GTTGAGTTTCATTTTATGGGGCATACTTATAATCGAAGTGTAGGTGCC 12546 Score = 205 bits (226), Expect = 7e-49 Identities = 347/497 (70%), Gaps = 13/497 (3%) Strand=Plus/Plus Query 5129 AAGTGAATAATCACCCGTCGGCGTGACACGCCGCCGCTGCGGTCGGTGAAGCGCATCGGG 5188 || |||| ||||||||| || || ||||| ||||| ||||| || |||| | ||| | | Sbjct 8845 AATTGAA-AATCACCCGACGCCGCGACACTCCGCCACTGCGATCACTGAAACTCATGGCG 8903 Query 5189 TTATTGTTCACGGCCAGAATCACCGCCGGGATGTGCGTGGAGTACGCATCCCGGTATTTC 5248 ||||||||||| ||||| | || || || ||| | || || || | | || ||| Sbjct 8904 TTATTGTTCACCGCCAGCACTACAGCAGGAATGCGGGTTGAATAAGGCTGTTTGTGCTTC 8963 Query 5249 GGGTCAACGGACACCGCATCGCCGCCGGTGATGGCCTTGAGTCCGGCACCGTCGCCGCTC 5308 |||||||||| || |||| ||||| || |||||||||| |||| |||||||| | Sbjct 8964 GGGTCAACGGCGACTTCATCCCCGCCTGTAATGGCCTTGATGCCGGAACCGTCGC----C 9019 Query 5309 CATTTTTC----CTGGTCCGGCAGGCGTATCAGTGAGAAGCCAGTTAACGCGGCACGTTC 5364 || | | |||||| |||||| ||||| || | || | | || ||||| Sbjct 9020 CACATAGCGGGTCTGGTCGGGCAGGATAATCAGCGAATACCCGACAATCAGCGCCCGTTC 9079 Query 5365 ACGCGGGGATTCCAGCGTCTCGATGGTGGCCGACGTGGCGTTATCCTCCCCGGCCAGCAG 5424 || || |||||| | | ||| | || || || || | | ||| ||||||| Sbjct 9080 CCGTGGATTTTCCAGTGCGGCCATGCTAGCGGAAACGGTATTGCCTTTCCCTGCCAGCAT 9139 Query 5425 GGTGGCTATTTCGGCCATGATACTTTTGCCGCTGCCGCCGGGACCGGTCACCTCCAGAAA 5484 || ||||| || | ||||||||| || ||||| |||| || || || |||||||| Sbjct 9140 CATGCAAATTTCAGCAAAGATACTTTTACCACTGCCTCCGGCTCCAGTGACTTCCAGAAA 9199 Query 5485 GAGCTGCCAGTCGTAGCGGTTTGCCAGCACCATAAACAGTGCAGCCAG-AATCACGTCGC 5543 | |||||||||||| ||||||||||| ||||||||||| |||||||| | || || Sbjct 9200 CAACTGCCAGTCGTAACGGTTTGCCAGTACCATAAACAGCGCAGCCAGCACTCTTTCTGC 9259 Query 5544 GTT-TTTCCGCACGGCCACCGGCGGCACGGTCAAGCCAGCGCCAGAAGGCGGGGGCGTGG 5602 || ||| | || | | | | || |||| |||||||||||||| |||| ||| Sbjct 9260 TTTGTTTTCACAATG--AGCAGTTGCCCGGTTGAGCCAGCGCCAGAACTGAGGGGAATGG 9317 Query 5603 GTTTCCAGCGTTTCACC 5619 ||| ||| ||||| || Sbjct 9318 CTTTGCAGGGTTTCCCC 9334 >seq2660 Length=968 Score = 78.8 bits (86), Expect = 7e-11 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 5447 CTTTTGCCGCTGCCGCCGGGACCGGTCACCTCCAGAAAGAGCTGCCAGTCGTAGCGGTTT 5506 |||||||||||||| || ||| || || || | ||||||||||||||| || || ||| Sbjct 266 CTTTTGCCGCTGCCACCTTCACCCGTGACTTCAATAAAGAGCTGCCAGTCATAACGATTT 325 Query 5507 GCCAGCACCATAAACAGTGCAGC 5529 ||||| | |||||||| ||||| Sbjct 326 GCCAGAATCATAAACAAGGCAGC 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37080405230848