Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1889 143 3e-29 >seq1889 Length=309471 Score = 143 bits (158), Expect = 3e-29 Identities = 329/491 (67%), Gaps = 6/491 (1%) Strand=Plus/Plus Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238 ||||| ||||| ||||| | ||| | ||| ||||| || || |||| | ||| || || Sbjct 15150 TTGTTGCCTCCTTGATCGACGTAGCGAGCCGTGTTGTTGTACACTCGGAGCATGGGGATC 15209 Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTAC 54296 | || ||||| | || ||||| || | || | |||| ||| ||||| | | | Sbjct 15210 AGGCCGTTGGAGGTGCCGTTGGTTCCCGCAATCATGGTTCCCGAGGCGCGAATGCAGTGC 15269 Query 54297 TAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 54356 |||| | || || || || ||| || ||||| || ||||| | | || | Sbjct 15270 GCGTTGA--GTCCGATGCCTCCGGCCGACTTGGAGATCAAGGCGCACTGCCAGAGGGTCT 15327 Query 54357 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 54416 ||||||| || || ||||| ||| | || || || ||| | ||| ||| Sbjct 15328 TGAAGATGCCGTCGATGGAGTCATCGTGCATTGTGAGAAGGAAGCAGGAACTCATCTGGG 15387 Query 54417 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 54476 | | ||||| || || || | ||| || || ||||| || ||||| || || | Sbjct 15388 GCTTGCAGGTTCCGGCGTTGAAGAGGGTGGGCGATGCGTGGGTGAACCAGCGATCCGACA 15447 Query 54477 GTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACA 54535 || ||||| || ||||| || | ||| || ||| | ||| || | ||| || || ||| Sbjct 15448 TGAGGTTGTAGGTTTCGATGGCAGCGTCGATGTCCTCCTTG-TGGACTCCCACGGCCACA 15506 Query 54536 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGAT 54595 ||||| | |||||| || || | ||| || |||| ||| || ||||||||||| || Sbjct 15507 CGCATAAGCATGTGTTGGGGACGCTCAGTGACCTTGCCGTTGATCTTCAGCAAGTACGAC 15566 Query 54596 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACT 54655 ||||| |||||||| || |||||| |||| | || || || ||||| | ||| || Sbjct 15567 CGTTCCAGGGTTTTAAACCCGAAATAGGTGTACGCGAAATCGCGGTCGTACACAATCGCT 15626 Query 54656 GAGTTGAGTTT 54666 ||||| ||||| Sbjct 15627 GAGTTCAGTTT 15637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593700344766720