Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_001697.1 Length=32355 Score E Sequences producing significant alignments: (Bits) Value seq2600 201 2e-47 >seq2600 Length=29343 Score = 201 bits (222), Expect = 2e-47 Identities = 544/822 (66%), Gaps = 23/822 (3%) Strand=Plus/Minus Query 12265 GGTGGAGCAATAATCACAAAACTTGCCCCATCGCCACTGTGTGCAGGGTCAAATCCGCCC 12324 || || |||| |||| |||| ||| ||||||| | ||||||||||||| |||||| Sbjct 20332 GGGGGCGCAACAATCGCAAACGTTGATGTATCGCCAGAGCGTGCAGGGTCAAAACCGCCC 20273 Query 12325 CAGACTTCACGATCGCCAAAAGGGCGATCCGCTTTTGGGTTAAAATCTTTCCATTTCGCA 12384 || |||||||| || ||||| ||||| ||| | |||||| |||| |||| | Sbjct 20272 CATACTTCACGCTCACCAAATGGGCGCGGCGCATCAGGGTTATGGTCTTCCCATAAGTGA 20213 Query 12385 ATATCTACACCACATTT---TAAAAGTTGTTTCACATTGAAAATTGAATCCGCATCA-TC 12440 ||||| || |||||| | ||| | || | ||| ||| || ||| | || Sbjct 20212 ATATCAACGCCACATCTATCTAATTGATGGT----ATTTAAATACAGATGCGCCACTGTC 20157 Query 12441 AATCCAAATACACATATAAAGTTGAT--TGAAGGCATATTTGCTATAGCGTTGTTT--TA 12496 | |||| || || ||||| || | || | || | |||| || || || Sbjct 20156 CA--CAAACACGCACATAAACAACATGTTAAAAGAATCAGGGTTATAT--TTATTGCGTA 20101 Query 12497 GTTTTTCAATGTTGAATAATTTGTCTGCACCGCCTTTTAGTGCATCTTCAATCGTCACCA 12556 | | || ||| || ||| ||| |||||| |||| ||||| |||| ||| | | Sbjct 20100 GCCTGTCGATGCTGGCTAAGTTGAA---ACCGCCATTTATCGCATCCTCAAGCGTAATTA 20044 Query 12557 CATAACGCCACTGACCATCGGGACAAAGTCGCCCACCGTCACGCAATTCTGCAAAAGTTG 12616 |||| ||||| |||||||| || ||| |||||||| || |||||||| |||| | | Sbjct 20043 CATATCGCCATTGACCATCAGGGCAATCACGCCCACCATCCCGCAATTCATCAAACTTAG 19984 Query 12617 GGAATGGCACGTTTTTGCGTTTAGGGTCGCCATCTCGCCAGTTGTCGCCACTCCAAAAAG 12676 | ||| | ||||| || | ||||| | ||||||| | ||| || ||||||| | Sbjct 19983 GAAATACAATTTTTTTACGCTCGGGGTCATTACCTCGCCATTCGTCACCCGTCCAAAATG 19924 Query 12677 AATAGGATTCATGAAATTTGGAAGAGGGCGTGCTGAAATAGGTCTCACGCCATTTTTCAT 12736 ||||| ||| ||| | | ||| ||| ||||| ||| ||||| | |||| Sbjct 19923 GATAGGCGGGATGTGTTTTCGCACTGGGAGTGGAAAAATAAGTCGTTCGCCAATGGTCAT 19864 Query 12737 GTGTTGCCATGGCTGATGCCACATCATCGAATCGCTGAAAGTCACGAATCCACGCATATT 12796 |||||||||| || || | || |||| || | | ||| ||| | | ||| ||||| Sbjct 19863 GTGTTGCCATTGCAGAGGATACTTCATTAAACCTTTTAAAATCAGGTACCCAGAAATATT 19804 Query 12797 CATCGCCGTACACATGGCCACTATTCCCTTGTGACGTATTTTTGTTGGTCGATAAAAAAT 12856 | || | || | ||| || || | ||| | |||||||| |||||||||||||| Sbjct 19803 CGTCACAATATAAATGCCCGCTGTAGGATTGCGCTGTATTTTTATTGGTCGATAAAAAGC 19744 Query 12857 GCAGTTCCGCGCCATTGCTTAAAATAATTGGGTTGCCAGTCAGCTCAACACCGAAATATT 12916 ||| ||| || ||||| |||||| || || || || || | || |||||| | | Sbjct 19743 GCAATTCAGCTCCATTACTTAAACGGATAGGATTCCCTGTTAAGGTGACGCCGAAAAACT 19684 Query 12917 CCCTCGCCATCTTCACGATGTAATTTTTAAAGATTTCTGCTTGTCGCTTACTAGCTGATA 12976 | || || ||||| || ||| ||| | ||| || || | || || || | Sbjct 19683 TCTCGGCAATATTCACAATATAAGACCGAAAAACTTCGGCCTGAGGTTTTGATGCGGACA 19624 Query 12977 AGAATATTTGA--TTGTCGCCGCTAAAAATTGCATCTTCCAACGCTTCAAAACTGAAATA 13034 | || | |||| || || | | ||| | |||||||| ||||||||||| ||||| Sbjct 19623 AAAAGAGTTGAGGTTTTC-CAGTTAAGCA-CGCATCTTCAAACGCTTCAAACGCAAAATA 19566 Query 13035 ATAAGTTGCCCCAATTTGGCGCGATTTCAGAATATTGCGCAC 13076 |||| || || ||||| || || | |||||| ||||| Sbjct 19565 CCAAGTAGCACCGATTTGACGGCTCTTTAAAATATTTCGCAC 19524 Score = 181 bits (200), Expect = 2e-41 Identities = 550/828 (66%), Gaps = 35/828 (4%) Strand=Plus/Minus Query 18720 TTAGTGCCTTTATTATTTGGCAATGAAACAGGCGTATTGGCAGGGCGATTAGCAAATCGT 18779 ||||||||| || | || |||||| | || || || ||||| || ||| || ||| Sbjct 13595 TTAGTGCCTACGTTTTGGGGAAATGAAGCGGGTGTGTTAGCAGGCCGTTTATGTAACCGT 13536 Query 18780 GCCGTCACCGTGGCAGACAGCCCAGCACGGGTACAAACAGGCGCGTTAGTGAGCCTAGGC 18839 || |||||| | || || || ||||| ||||| ||||||| || ||| | ||||| Sbjct 13535 GCGGTCACCATTGCCGATAGTCCAGCTCGGGTTAAAACAGGTGCTTTACTTGATTTAGGC 13476 Query 18840 AGTGCCAATAAACCACTGGATAAAGACGGCAATGAACTTACCCTTGCGCACTTAAAATCC 18899 |||| |||| || ||| ||| ||| || | || ||| | | | Sbjct 13475 AGTGTTGATAAGCCGAAAGATGGTAGCGGTGTGGAAATTGATTTAGC-CACCTTGCAGGC 13417 Query 18900 CTTG--AAACCGCGCGTTATTCTGTGCCGATGTGGTACCCCGATTATGACGGCTAT-TAC 18956 ||| ||| | | |||||| || ||||||||||||||||| |||||||| ||| || Sbjct 13416 GTTGGAAAAACTC-CGTTATAGCGTACCGATGTGGTACCCCGACTATGACGG-TATGTAT 13359 Query 18957 CGGGCAGACGGTCGCACGTTAGATGTAGAAGGGGGCGATTATCAAGTGATTGAGAACCTG 19016 || | || |||||||| |||||||| || || || |||| ||||| |||||| |||||| Sbjct 13358 TGGTCTGATGGTCGCACCTTAGATGTTGAGGGTGGTGATTTTCAAGCGATTGAAAACCTG 13299 Query 19017 CGTGTAGTGGATAAAGTGGCGCGTAAAGTGCGTTTATTAGCGATTGGGAAAATTGCAGAT 19076 || | || |||||||| |||||| || || || || |||| ||||||||||| Sbjct 13298 CGCATTGTCGATAAAGTCGCGCGTCGCGTTCGCTTGCAGGCTATTGCTAAAATTGCAGAC 13239 Query 19077 CGTTCTTTTAACTCCACAACATCAAGCACGGAATATCACAAAAATTATTTCGC-CAAACC 19135 || ||| ||| ||| || || | ||| || ||| ||||| || | ||| Sbjct 13238 CGCAGTTTAAACAGTACACCAAACAGTATCGAAACCCATAAATCCTATTTTGCTCGCACC 13179 Query 19136 GCTTCGTGATATGAGCAAAT-CCGCAACCATCAACGG---CAAGGATTTCCCAGGCGAAT 19191 | ||||| ||| || | |||| |||||||| || | ||||| || |||| Sbjct 13178 -ATGCGTGAAATG-TCACGTAGCGCAGAAATCAACGGTGTCACG---TTCCCTGGTGAAT 13124 Query 19192 GTATGCCACCGAAAGATGATGCCATCACGATTGTATGGCAAAGCAAAACCAAGGTAACCA 19251 ||| ||| ||| |||||| || | || ||||| ||| ||| |||| | || | Sbjct 13123 GTAAGCCGCCGCAAGATGGTGACGTCGTAATTGTGTGGAAAACTAAAAATACCGTTGAAA 13064 Query 19252 TTTACATCAAGGTTCGCCCTTACGATTGCCCGAAAGAGATTACGGCAAATATTTTCTTAG 19311 ||||||||| || | | || || |||||||||| ||||||| | ||| || | | Sbjct 13063 TTTACATCACCGTAAGAACGTATGAATGCCCGAAAGGAATTACGGTCAGTATCTTACTGG 13004 Query 19312 ATTTAGACAGCTTAGGAGAGTAAACAATG---GAACG--TATTAGTGGAATGAGTTTTGA 19366 || | ||||| |||||| | |||| |||| ||| || ||| ||||| Sbjct 13003 AT---GCTAGCTT-GGAGAGCGCATAATGAGCCAACGTTTATCAGGTCAAT--CCTTTGA 12950 Query 19367 CTTCTATTTATTCGGGTTGCCT--ATTCATGCAGAGTCTATCAGTTTATCCATTACAGAT 19424 |||| || | ||| || || ||||| | || | || |||||||||| ||| Sbjct 12949 CTTCAATATCGACGG--TGACTTAATTCACGTCGAAAAAGTGAGCCTATCCATTACCGAT 12892 Query 19425 AATAGTACCGTTGTACAAACACGTGGAATTCCAGATGGTTGGGTAAGCGGTGATGTGGCA 19484 || | | | | ||||| || || || ||||| |||| || |||||||| Sbjct 12891 AACACCGCAGCCGCGCAAACGCGCGGTATGCCAGACGGTTTTGTCGCGGGTGATGTAAGC 12832 Query 19485 GCAGAAGGCGAAATTG-AATTAGATGCAAAAAATTTCTCAAAATTATC 19531 ||||| || ||||| | ||||| ||| ||||| | | | |||||| Sbjct 12831 GCAGAGGGTGAAATCGAAATTA---GCACAAAATATTTTGAGATTATC 12787 Score = 87.8 bits (96), Expect = 4e-13 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 25389 CTGCAGTGAACGCATT-TTAAATTTAATCGCCTATCAACGCGACGTAGAACGATTTGAGG 25447 ||||| |||| |||| ||||| || | || |||||||| || | | || ||| | Sbjct 7139 CTGCACCGAAC-CATTATTAAACTTGTTGGCGTATCAACGGGATATCCAGCGTTTTAATA 7081 Query 25448 GAGAGCCGTTAGAGCTCTTCCGCAAGCGTGTGAAATATGCCTTTTTAAATGCGAAAGATG 25507 || || || || | | ||| ||||| ||||||||||| ||| | ||||| || || Sbjct 7080 ATGAACCCTTGGATTTATACCGTAAGCGCGTGAAATATGCGTTTATTAATGCTAAGGACT 7021 Query 25508 CGGGCAGTAAAGCGGGCTTTATTCGAATTTTTGAACGCTTAGGCATTGGCTACGTAGAAA 25567 | ||||| ||||| |||||| |||||| ||||| | ||| ||||||| || |||| Sbjct 7020 CAGGCAGCGTCGCGGGATTTATTGACATTTTTAAACGCCTTGGCGTTGGCTATGTCGAAA 6961 Query 25568 TTGAAGAACG 25577 || | || || Sbjct 6960 TTAATGAGCG 6951 Score = 86.0 bits (94), Expect = 1e-12 Identities = 261/398 (66%), Gaps = 4/398 (1%) Strand=Plus/Minus Query 24576 CAGGTTATTACCGTATTTTGCCAGAATCTATCGCAGGGGTAAGTGCG-GTAGAAAATTTA 24634 ||||||||| ||||||||| || | | || |||||| | | ||| || |||| | Sbjct 7963 CAGGTTATTTCCGTATTTTACCCGTGGCGATTGCAGGGATT-GAGCGCGTTCAAAACGAA 7905 Query 24635 GAAGATTGGCTAACATCGCCAGGTGCTGACAGA-GAAACTAACGACGAATTACGAGAACG 24693 || | ||| || |||||||| || || |||| | || | || || || || || Sbjct 7904 GATAACTGGTTATTGGTACCAGGTGC-GAATGACGAAAGTGACAATGATTTGCGTGACCG 7846 Query 24694 TTATCGCACGCAATTTTCGAGTGTTGGGCAACACCATATTGACAGTGTTTACAAAGGCAT 24753 | |||| |||| | || || ||| | || | |||| || || || || Sbjct 7845 CTGCCGCAATCAATATAACTTAGTCGGTCAATATCACACTGACGCCGTATATCGCGGGAT 7786 Query 24754 GATTGCGAAAGTCGCCGCCTTATCGGTGGACAGAATTTATTTTAAACACGATGCACCACG 24813 |||||| || || | || |||| | ||| | |||| ||| || ||||| || || Sbjct 7785 GATTGCAAATGTTGTCGGCTTAAGCATTGACCGTATTTTCTTTTTGCATGATGCCCCTCG 7726 Query 24814 TGGGCCAGGTACAGCAAACGCTTATTTGTTATTGGATACGGGTGTAACCAGTCAGCCGTT 24873 ||| | || || || ||||| ||||| ||||| || | || || | |||||||| || Sbjct 7725 CGGGGCGGGAACCGCTAACGCCTATTTATTATTAGACAGCGGCGTCGCAAGTCAGCCTTT 7666 Query 24874 TATTGATAAAGTCAATCGCTATGTACGTGACGAGGGTTTTCATGGACACGGTGACGATTT 24933 ||| || ||||| ||| ||| | || | || ||||| |||||||| ||| | Sbjct 7665 TATCGACAAAGTGAATGATTATATTAATGCGCAAGGCCACCATGGGCACGGTGATGATAT 7606 Query 24934 AATTTGCTACGCCATGCCAGAAACTAAACACAATTTAA 24971 |||| ||||||||||||| | |||| |||| Sbjct 7605 GCAGTGCTTTTCCATGCCAGAAACACAGCACACATTAA 7568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103410882876256