Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq2692 174 5e-39 seq2599 165 2e-36 seq2766 109 2e-19 >seq2692 Length=686 Score = 174 bits (192), Expect = 5e-39 Identities = 304/437 (70%), Gaps = 4/437 (1%) Strand=Plus/Minus Query 42984 ATTCTCGACCAGTTTTTGGATGAGAAAGAGGGAAATAGCCTTACTGCTTACAAAGATGGC 43043 ||||||| |||||||||||||| |||||||| || | | | || || ||| || Sbjct 637 ATTCTCGCTCAGTTTTTGGATGAAAAAGAGGGCAACCGATTATCGGCGTATCGGGAT-GC 579 Query 43044 AGC-GGCATCTGGACGATATGCCGTGGTGCCACAATGGTTGATGGCAAGCCAGTAATGCA 43102 ||| ||||||||||| || ||||| || | || ||||||| || || || Sbjct 578 AGCTGGCATCTGGACAATCTGCCGGGGCGTAACCCGAATTGATGGTGCTCCCGTTCGTCA 519 Query 43103 GGGCATGAAGTTGACGCAGGCCAAATGCAATCAGGTAAACGCCATCGAACGCA-ATAAGG 43161 ||| ||| | |||| | | | ||||| | | | ||||||| ||| ||| || ||| Sbjct 518 GGGTATGCAACTGACACCGAACCAATGCCGTGATCTCAACGCCAAAGAA-GCAGATCAGG 460 Query 43162 CTCTTGCGTGGGTTGACCGCAATATCAAAGTTCCTCTGACCGAACCGCAGAAAGCCGGTA 43221 | |||| ||||| || |||| || || || ||||| ||||| |||| |||||| | Sbjct 459 CCGTTGCATGGGTCAGAAGCCATATTAACGTGCCACTGACTGAACCACAGATAGCCGGCA 400 Query 43222 TCGCATCTTTCTGCCCGTACAACATAGGCCCAGGCAAATGCTTCCCATCGACGTTCTATA 43281 | || ||||||||| |||||||| ||||| || | ||||||| | || |||||||| Sbjct 399 TTGCCAGTTTCTGCCCATACAACATCGGCCCCGGTAGATGCTTCTCTTCCACGTTCTACC 340 Query 43282 AGCGTCTTAATGCTGGCGACCGCCACGGGGCTTGTGAGGCGATCCGATGGTGGATAAAGG 43341 || ||||| || || | || ||||||||| ||| || | | |||||| | Sbjct 339 GAAAACTGAATGCGGGTGATAGGCAAGGGGCTTGTCAGGAAATTAAACGCTGGATATTTG 280 Query 43342 ATGGTGGCCGCGACTGTCGACTGACCAAGGGCCAGAAGAATGGATGCTATGGGCAAGTTG 43401 | || ||| | || || |||| |||| | ||||| ||||| || ||||| || || | Sbjct 279 ACGGCGGCAGAGATTGCCGACAGACCCAAGGCCAAGCTAATGGCTGTTATGGTCAGGTAG 220 Query 43402 AGCGGCGTGACCAGGAA 43418 |||| |||| |||||| Sbjct 219 AGCGACGTGCTCAGGAA 203 >seq2599 Length=15424 Score = 165 bits (182), Expect = 2e-36 Identities = 260/367 (71%), Gaps = 8/367 (2%) Strand=Plus/Plus Query 41432 GATTCTCTGCAATTCATAAAAACCATCCCTGATAATTCCGTAAACCTGATCGCGACAGAC 41491 || || |||||||| || |||||| | || ||||| | | ||||||| || || ||| Sbjct 12616 GACTCGCTGCAATTTATCAAAACCCTGCCGGATAACTGTATTGACCTGATAGCCACTGAC 12675 Query 41492 CCGCCCTATTTTGGCGTTAAGTCGAACGA--CTGGGACAACCAGTGGGAAAGTGACGCGG 41549 || || ||||| | ||||| ||| | |||||||| |||||||| || | ||| Sbjct 12676 CCACCGTATTTCCGGGTTAAA--GAATGTGGCTGGGACAGGCAGTGGGAGGATGTCACGG 12733 Query 41550 ACTTT--TTGGGCTGGCTTGATGAGTTTCTGGCGGAGTTCTGGAGGATACTGGCCCCAAA 41607 ||| ||| | ||||| || ||| | ||| | ||||||||| || ||||| || || Sbjct 12734 -CTTACCTTGCG-TGGCTGGACGAGATGCTGACTGAGTTCTGGCGGGTACTGAAACCCAA 12791 Query 41608 TGGAAGCCTGTATATGTTTTCCGGTTCGCGGCTTGCGGCAAAAGTTGAATTACTTACCCG 41667 || |||||||||||||| | ||||| || || || || | ||| | || || Sbjct 12792 CGGCAGCCTGTATATGTTCTGTGGTTCCCGTCTGGCCTCAGATACTGAGCTGCTCGTGCG 12851 Query 41668 CGACCGTTTCAATGTTTTGAACCACATCACCTGGGCTAAACCGAGCGGTGTATGGCGGCG 41727 || ||||| ||||| || ||||| || | |||||| |||||| ||| ||||| | Sbjct 12852 TGAACGTTTTAATGTGTTAAACCATATTATCTGGGCGAAACCGTCCGGCCCGTGGCGCAG 12911 Query 41728 GCAAAATAAAGAGAGCCTGCGAGCATTCTTCCCGGCAACCGAGCGCATCATATTCGCTGA 41787 ||| |||||||| |||||||| | || ||||| || || ||||| || || || || Sbjct 12912 GCAGAATAAAGAAAGCCTGCGGATGTATTTTCCGGCCACAGAACGCATTATTTTTGCCGA 12971 Query 41788 ACATTAC 41794 ||||||| Sbjct 12972 ACATTAC 12978 Score = 123 bits (136), Expect = 7e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 42178 GCGCCGCCCGTTCTCTGTGACTGCAGATGTTCCCTATACGGATGTTTGGGAGTTCCCACC 42237 ||||||||||||||| ||||| ||||| || || ||||| || || ||| | || |||| Sbjct 13332 GCGCCGCCCGTTCTCAGTGACGGCAGACGTGCCTTATACCGACGTCTGGCAATTTGCACC 13391 Query 42238 GGTGCAGTATTACCCAGGGAAACACCCGTGCGAGAAGCCAGCTGCGATGATGGAACATAT 42297 || |||||||| || || || ||||| ||||| ||||| |||| ||||| |||||| Sbjct 13392 CGTTCAGTATTATCCGGGCAAGCACCCCTGCGAAAAGCCTGCTGACCTGATGACACATAT 13451 Query 42298 CATCAGGAGCAGCTCTCGCCCCGGCGATGTAGTCGCCGACTTCTTCATGGGGTCCGGTAG 42357 ||| | |||| || || ||||| || || || ||||| ||||| ||||| Sbjct 13452 TATCCAGTCCAGCAGCCGGGAAGGGGATGTGGTGGCGGATTTCTTTATGGGTTCCGGGGC 13511 Query 42358 TACGATTAAGGAGGCTCTGAAGCTTGGGCGTAAGGCCATAGGCGTAGAAATTGAAGAAGA 42417 || | || | ||| ||||| || ||| || | ||||| || | |||||||| Sbjct 13512 AACATTGAAAGCGGCGCTGAAACTCAATCGTCGGGTTCTGGGCGTTGAGCTGGAAGAAGA 13571 Query 42418 GCG 42420 ||| Sbjct 13572 GCG 13574 >seq2766 Length=35022 Score = 109 bits (120), Expect = 2e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42188 TTCTCTGTGACTGCAGATGTTCCCTATACGGATGTTTGGGAGTTCCCACCGGTGCAGTAT 42247 ||| ||||||| | |||||||| ||||| ||||||||| | | || | || || ||| Sbjct 29392 TTCACTGTGACCGTTGATGTTCCTTATACCGATGTTTGGAATTATTCATCTGTACAATAT 29333 Query 42248 TACCCAGGGAAACACCCGTGCGAGAAGCCAGCTGCGATGATGGAACATATCATCAGGAGC 42307 |||||||| || || || || || ||||| |||| |||||||||||| || |||| ||| Sbjct 29332 TACCCAGGCAAGCATCCATGTGAAAAGCCTGCTGAGATGATGGAACACATTATCAATAGC 29273 Query 42308 AGCTCTCGCCCCGGCGATGTAGTCGCCGACTTCTTCATGGGGTCCGGTAGTACGATTAAG 42367 || || || ||||| || || || ||||| ||||| || || || || || Sbjct 29272 AGTAGCCGAGAGGGTGATGTTGTTGCTGATTTCTTTATGGGATCTGGGGCAACAATAAAA 29213 Query 42368 GAGGCTCTGAAGCTT 42382 | ||| || || ||| Sbjct 29212 GCGGCACTAAAACTT 29198 Score = 96.9 bits (106), Expect = 1e-15 Identities = 233/350 (67%), Gaps = 2/350 (1%) Strand=Plus/Minus Query 41446 CATAAAAACCATCCCTGATAATTCCGTAAACCTGATCGCGACAGACCCGCCCTATTTTGG 41505 |||||| || | || || |||| | | |||| ||||| || |||||||| |||||| Sbjct 30104 CATAAAGACACTTCCAGACAATTGCATTGACCTAATCGCAACTGACCCGCCTTATTTTCA 30045 Query 41506 CGTTAAGTCGAACGACTGGGACAACCAGTGGGAAAGTGACGCGGACTTTTTGGGCTGGCT 41565 ||||| | ||||| || |||||||||| || | | | || ||| ||||| Sbjct 30044 AGTTAAAAGCTGTGGTTGGGATAATCAGTGGGAAAATGTCACTGCCTATTTATCTTGGCT 29985 Query 41566 TGATGAGTTTCTGGCGGAGTTCTGGAGGATACTGGCCCCAAATGGAAGCCTGTATATGTT 41625 |||||| | || | || || |||||| || | |||| || || || || ||||| Sbjct 29984 TGATGAAATGCTTTCTGAATTTTGGAGGGTATTAAAGCCAACAGGCAGTCTTTACATGTT 29925 Query 41626 TTCCGGTTCGCGGCTTGCGGCAAAAGTTGAATTACTTACCCGCGACCGTTTCAATGTTTT 41685 || || || |||||||| | |||| || | || || || |||||| |||| Sbjct 29924 TTGTGGATCTAAACTTGCGGCTGATACTGAAATATTGGTTCGTGAGCGGTTCAATATTTT 29865 Query 41686 GAACCACATCACCTGGGCTAAACCGAGCGGTGTATGGCGGCGGCAAAATAAAGAGAGCCT 41745 || || || | |||||||||||| || |||||| | ||||| || Sbjct 29864 AAATCATATAATTTGGGCTAAACCGTCAGGGCCATGGCGAAGAGCGTGTAAAGCTGATCT 29805 Query 41746 GCG-AGCATTCTTCCCGGCAACCGAGCGCATCATATTCGCTGAACATTAC 41794 ||| || || |||| || || |||||||| ||||| || || |||||| Sbjct 29804 GCGTAGTTTTTTTCCAAGC-ACAGAGCGCATTATATTTGCAGAGCATTAC 29756 Score = 80.6 bits (88), Expect = 8e-11 Identities = 155/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 8119 GTAAACCGGGGCAATTTACCGGCCATTAAACTCGGAACCGCAAGCGTGCGACTTTCCCGC 8178 || ||||| || |||||||| || ||| || || || ||||| || | |||||| || Sbjct 15132 GTTAACCGAGGGAATTTACCTGCAATTGTTCTAGGTACTGCAAGAGTTCAACTTTCACGA 15073 Query 8179 AGAAAACGGGATAAGAAAGGGGCCA--ACAGCGTTCTGCGTATAGGGCCGTTCCGTTTTC 8236 || | || || |||||| | || |||| ||| || | || || ||||| Sbjct 15072 AGTCGA-GGTATT-GAAAGGCGACACAACAGTGTTTTGAAAGTCGGTAAATTTACTTTTC 15015 Query 8237 CGGGCGGTTTTATCCAGCAACTTAAAAATGGCCGCTGGCATGTCATG--AGGCGTACGTC 8294 || | |||||||||||||| || ||||||||||||||||||||| | | || | Sbjct 15014 ATGGTGCGTTTATCCAGCAACTGAATAATGGCCGCTGGCATGTCATGCAACGGGTTGGGA 14955 Query 8295 AAAACCTCGTTACCCCATTGAAGTGGTCAGCATCCCGCTGGCA 8337 ||| | || || || |||||||| |||| || ||| | ||| Sbjct 14954 AAAGC--CGATATCCGATTGAAGTTGTCAAAATTCCGTTAGCA 14914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148273357051616