Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value seq348 187 6e-43 seq2629 114 3e-21 seq2680 113 1e-20 seq2638 80.6 7e-11 >seq348 Length=55286 Score = 187 bits (206), Expect = 6e-43 Identities = 295/423 (70%), Gaps = 0/423 (0%) Strand=Plus/Minus Query 7829 CGGCGCGTTTACCGGTCGCCCGGTTGAGAAAGAAATCACCTGGACGCAAGGCGATaaaaa 7888 ||||||||| ||||| |||||||| || || |||||| |||| ||| ||||| | | Sbjct 16536 CGGCGCGTTCACCGGCCGCCCGGTGGAAAAGGAAATCCGTTGGAAGCAGGGCGACGAGGA 16477 Query 7889 aaTCACCGCGACCGTGTATGTTCGCCCGATGGGTTATCACACAGCAACGTCCGATGTGCT 7948 | ||||| ||||||||||| || ||| |||| | || | || ||| || ||||| Sbjct 16476 GCTGACCGCCACCGTGTATGTGCGGCCGCTGGGATTCCAGGCGGCGGTGTCGGACGTGCT 16417 Query 7949 GGCTTTTGGTGGTAAGGTCGATGGTGTGGCAGGGCGTATCGCCGCATCCATCTGCGATGA 8008 | | ||| ||| || ||||| || || ||||| || ||||||||| | Sbjct 16416 GTCGGCCACGAACAAGCACGACGGCGTGGCCGGCCGCATCGCGGCCAGCATCTGCGACCA 16357 Query 8009 ACATGGTAAACCCATCTTCACCCCGGCTGACATTACTGGTGAGGCAGATCCTGAACGTGG 8068 | || || | | |||||| |||||||| || || ||||| ||||| || || || Sbjct 16356 GGACGGCAAGGCGGTGTTCACCGTTGCTGACATCACAGGCGAGGCCGATCCGGAGCGCGG 16297 Query 8069 TGCACTGGATGGCGGCCTGACGGTAGCACTGCTTCTGGCCATTCAGGAAGTTAACGATCT 8128 ||| |||| ||| | || |||| || ||||| |||| || || || ||| | || Sbjct 16296 CGCATTGGACGGCAACTTGTCGGTGGCGCTGCTGATGGCAATCGGCGAGGTGAACAACCT 16237 Query 8129 GGGAAAGACTTCGAGCTCAGCGCCGAAGACGAATTCTGGTGCGAGCTCGTCCTCAACGGA 8188 |||||| || |||||| | | | || || || | ||||||||||| ||||||||||| Sbjct 16236 GGGAAAAGCTACGAGCTGACCCCGGAGGATGAGCTGTGGTGCGAGCTGGTCCTCAACGGG 16177 Query 8189 ATCGGAGGCAGAACAATCGCCGAAGCGCGGGAAGTCCTCTCATTCAAAGAGTCCCAACTC 8248 ||||| ||| | | |||| || ||| |||| |||||| || |||| ||| ||| Sbjct 16176 ATCGGCGGCCGCAGCATCGGTGAGGCGAAGGAACGCCTCTCCATCCGGGAGTTCCAGCTC 16117 Query 8249 TGG 8251 ||| Sbjct 16116 TGG 16114 Score = 109 bits (120), Expect = 1e-19 Identities = 344/527 (65%), Gaps = 12/527 (2%) Strand=Plus/Minus Query 6951 TCCCTATGTGGTCTGGCAGAACATCACCGGTTCTCCAGAGAACTACATTGCCCAGCGCCC 7010 |||||||| ||||||||||| || ||| || |||||||| | ||||||||||| Sbjct 17640 TCCCTATGCGGTCTGGCAGACGGTCGGTGGTAGCCCCGAGAACTATTTGGCCCAGCGCCC 17581 Query 7011 TGACGCAGACTTTTTCACGCTGCAGGTGGATGCATATGCCGACACCGTGGATGAAGTGAT 7070 ||||| ||| | || ||||||||| | ||||| | | || | |||| Sbjct 17580 TGACGTGGACGCGCTGACCACGCAGGTGGACGTTTATGCAAAGAACGAAGCATCCCTGAT 17521 Query 7071 TGCCGTGGCTACTGCGCTGCGGGATGCCATTGAGCCGCACGCGCATATCACGCGCTGGGG 7130 || | || || || ||||| |||||| | || || | || | | || || |||||||| Sbjct 17520 TGAGGGTGCCACCGCACTGCGTGATGCCTTCGAACCTCGCGGGTACATAACCCGCTGGGG 17461 Query 7131 CGGACAGGAAAGAGACCCCGAAACAAAGCGCTATCGCTACTCATTCGATGTTGACTGGAT 7190 ||| ||| || |||||||| ||| | ||| ||||||||||| || ||| | Sbjct 17460 CGGCCAGATGCTTGATCCCGAAACGAAGTTGTTGCGCCTGTCATTCGATGTGGATTGGCT 17401 Query 7191 AGTCACTCGATAA----ACG-TATTATTCAACCACCGGCCTTGA--GCCGGtttttttA- 7242 ||| |||| ||| || || | ||| || || | || || |||||| Sbjct 17400 GGTCCCTCGGTAACGCCTCGCTACATCCCCACCCACGCCCCGCACTGCGGGGCTTTTTAC 17341 Query 7243 TGACC---GGAGATAACAATGTCTGTATTGACGCAAGGTACGCAGCTCTTTGTGCTCGTA 7299 || || ||||| ||| ||| | |||| ||||| || ||||| | | || | Sbjct 17340 TGCCCGCAGGAGA-AACGATGAGCATCCTGACCCAAGGAACCCAGCTGTACGGCCTGATC 17282 Query 7300 AAAGGCAAGGTGAGCGAAGTTGAATGTATCACTGCATTTTCACCCGGCAGCAATCCGGCT 7359 || ||| || |||| | || || ||||| || || ||||||| | ||||| Sbjct 17281 AACGGCGCTGTCCGCGAGATCGAGTGCATCACGGCCTTCAACCCCGGCACCGCGCCGGCG 17222 Query 7360 GACCAGATTGAAGACACCTGTCTTTCTGAACGCTTTGATCGCAGCTATAAGCGTGGTCTT 7419 |||||||| || ||||||||||| || || | | |||| ||| ||| || || Sbjct 17221 GACCAGATCGATGACACCTGTCTGTCGGAGACCAATACGCGCACCTACAAGAAGGGCCTG 17162 Query 7420 CGAACGCCTGGCACAGCATCACTGACGCTTAACGCTGATCCTAAAAA 7466 || ||||| ||| || || |||| | ||||| || || || || Sbjct 17161 CGCACGCCGGGCCAGGCGTCGGTGACCATCAACGCCGACCCGAAGAA 17115 >seq2629 Length=15125 Score = 114 bits (126), Expect = 3e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 31929 GTCGATTACCTGACACTAATGACCGCTGAGAAGGCCGATCGTAACGACCTTGCTTACGGC 31988 || ||||| | || || |||| |||| || || || || ||||| |||| ||||| Sbjct 4145 GTGGATTATTTAACGCTGATGAAAGCTGGCAAAGCAGACCGCAACGATATTGCCTACGGT 4086 Query 31989 ATGATCACCAAAGGATTGAAGAACCTTGCCAAAGAGCTTGAT--TGCGTTGTTGTGCTTC 32046 ||||||||||| | ||| | || || |||||||||||| | || || | | | | Sbjct 4085 GAAATCACCAAAGGCCTCAAGCAGCTAGCAAAAGAGCTTGATACTACGGTGGTAT--TAC 4028 Query 32047 TGACACAGCTTAACCGCGCACTGGAAAGCCGAACCAATAAACGCCCATTACCAAGTGACT 32106 | |||||||| |||||| ||| ||| ||||||| || || || | ||||| || Sbjct 4027 TAACACAGCTAAACCGCAAACTTGAAGATAGAACCAACAAGCGACCTATGCCAAGCGATA 3968 Query 32107 CGCGCGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTGGGGAT 32155 || ||||| || || || || |||||||||||||| ||| ||||||| Sbjct 3967 GCCGTGATACGGGTCAAATCGAGCAGGATTGCGATTACTGGATGGGGAT 3919 >seq2680 Length=520 Score = 113 bits (124), Expect = 1e-20 Identities = 218/322 (68%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 15920 ACCCGGATAAATATGCCCGTATCGATACCGGAGCCATCATTGACCAACGGCCGGTGAGCG 15979 ||||||||||||| |||| |||||| ||||| | |||||| |||||||| | | Sbjct 453 ACCCGGATAAATACGCCCATATCGACACCGGTATCCGCATTGATGAACGGCCGATTTCGG 394 Query 15980 TGATCCCGCCGGGCAACCAGTCGCCGCCTGCGAATATCGTGATCAGCTCGTTTTCCGTGG 16039 | ||||| ||||| ||||| ||||| || | ||||||||| ||| |||| Sbjct 393 TTATCCCACCGGGAGTACAGTCACCGCCGAAAAACGTGGTGATCAGCAGTAGTTCGGTGG 334 Query 16040 TTCAGCAAAATATCAGCGTCGAAACAATGCGCGTGAGCTGGTACCAGGCGCAGAACGCTA 16099 | || || || | || || ||| |||||||||| || | || | |||| Sbjct 333 TGCATCAGGGAATTGCCATCACCACCTTGCAGGTGAGCTGGTCGGCGGTGGAGCAGGCTA 274 Query 16100 TCGCCTATGAAGCACAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCT 16159 | || |||||||| | ||||| || | | || |||||| | || ||||| ||| Sbjct 273 TTGCTTATGAAGCTGAGTGGCGGCGGGATAATGGCAACTGGATAGCCGCCCCGCGAACCG 214 Query 16160 CCACCACGTCATTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCG 16219 |||| || || || || ||| || || ||||| ||||| | || |||||||| | Sbjct 213 CCACACCGGGTTTTGAGGTGCCGAATATCTACGCCGGACGCTATCAGGCTCGGGTGCGGG 154 Query 16220 CAATCAATGCCGCAGAAATTTC 16241 | || || ||||| || ||||| Sbjct 153 CGATTAACGCCGCTGAGATTTC 132 >seq2638 Length=7155 Score = 80.6 bits (88), Expect = 7e-11 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 10509 AACGCCAAAGGCGGCGTTTACTCTTCTGCCGATCTCAGTCAGTACAGTAACTCTGTCGTC 10568 || ||||||||||| ||||| ||||| ||| | ||||||||||| | ||| Sbjct 6045 AATGCCAAAGGCGGGATTTACCGATCTGCTGATTTAAGTCAGTACAGCGGGCAGATTGTC 6104 Query 10569 AGCTCTCCAACACTGTTTGCCTTTGCCAAAGGGGCCGGATTGATGGGGGAGGCTGGGCCG 10628 ||| ||||| ||||| |||||||| |||| ||| ||||||| || || || ||| Sbjct 6105 AGCAGCCCAACCTTGTTTAAGTTTGCCAACGGGGGCGGCGTGATGGGCGAAGCCGGTCCG 6164 Query 10629 GAGGCTATTATGCC 10642 ||||| ||| |||| Sbjct 6165 GAGGCCATTCTGCC 6178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130277169122784