Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2252 131 1e-25 seq2162 122 8e-23 seq2318 93.3 4e-14 seq1739 86.0 5e-12 >seq2252 Length=1130325 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||| ||| || |||||| |||||||||||| ||||| Sbjct 562230 GTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCG 562289 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || |||||||| || || || ||||||||||| || || ||| || Sbjct 562290 GCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTTGCCTTG 562349 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||||| | ||||||||| | ||| | || || ||||||| |||| Sbjct 562350 ACGTTCTCAATGGTGTCCGAACCCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTT 562409 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 562410 TTCACGAAGATCTGCAT 562426 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| |||| ||||| || || || |||||||| ||| || |||||| ||||||| Sbjct 563530 ACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCG 563589 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| |||| || |||||||| || || || || |||||||||||| Sbjct 563590 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGG 563649 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | | |||||||||| ||| | || || Sbjct 563650 ATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTT 563709 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||| || || || || ||||| Sbjct 563710 CCGGTCAAAGTCTTCACGAAGATTTGCAT 563738 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||| ||||| | ||||| |||||||||||| ||||| Sbjct 563770 GTCGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCGAGCTGCTTTCCG 563829 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || ||||||||||||||||| |||||||||||||| || || || Sbjct 563830 GCGAAGATCAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 563889 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| ||||| | | |||||||||| ||| | || || || || || || Sbjct 563890 ACGTTTTCGATAGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTTCCCGTGAGGGTC 563949 Query 118722 TTTACAAAAATCTGCATG 118739 || || || || |||||| Sbjct 563950 TTGACGAAGATTTGCATG 563967 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| |||| ||||| ||||| || |||||||| ||| || || | ||||||| Sbjct 562721 ACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTCCTTCCATCCTCG 562780 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| |||| | ||||||||||| || || || ||||| || ||| | Sbjct 562781 AGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGGGATTCCCTCTTTATCTTGA 562840 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | ||| | |||||||| | ||| || || | || | || || Sbjct 562841 ATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACCCTCAACTTCAAGAGTGATGGTCTTT 562900 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||| || || ||||| ||||| Sbjct 562901 CCGGTCAAAGTCTTCACGAAAATTTGCAT 562929 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||| || || | ||||| ||| || | ||| ||||| Sbjct 562961 GTGGATTCCTTCTGGATGTTGTAGTCACTGAGGGTGCGGCCATCTTCCAACTGCTTTCCG 563020 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||| || || || || |||||||||||| || || || Sbjct 563021 GCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTG 563080 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | | |||||||||| ||| | || || || || || || Sbjct 563081 ACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAGTCTTTCCCGTGAGGGTC 563140 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 563141 TTGACAAAGATTTGCAT 563157 >seq2162 Length=74254 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||| ||||||| |||||| ||| |||||||| |||||| Sbjct 48611 GTCGATTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCTTCGAGCTGCTTTCCA 48552 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||| | |||||| || ||||| |||||||||||||| || || || Sbjct 48551 GCGAAGATGAGTCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 48492 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || ||| | | ||| ||||| | ||| | ||| ||||| || || || Sbjct 48491 ACGTTCTCAATGGAGTCTGAACCCTCAACCTCAAGGGTGATCGTCTTGCCCGTAAGCGTC 48432 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 48431 TTCACGAAGATTTGCAT 48415 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || ||||| ||||| || || |||| |||||| |||||| Sbjct 49079 ACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTCAAAGTGCGGCCATCCTCA 49020 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || ||||| |||| | ||||||||||| || || || || || |||||| | Sbjct 49019 AGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGA 48960 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | ||||| | || | || |||||| || | || | ||||||| Sbjct 48959 ATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGACTTCCAATGTGATCGTTTTG 48900 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 48899 CCCGTGAGGGTCTTCACGAAAATCTGCAT 48871 >seq2318 Length=474513 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||| || |||||||| || || || || |||||||| || || || || || | Sbjct 465012 AGATCAGGCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACAT 464953 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 |||| |||||| | | ||||||||||| ||| | ||||||||||||| ||| || | Sbjct 464952 TCTCGATGGTGTCAGAGGCCTCGACCTCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGA 464893 Query 118726 CAAAAATCTGCATGGC 118741 | |||||||||||||| Sbjct 464892 CGAAAATCTGCATGGC 464877 >seq1739 Length=92152 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| |||| || |||||||| || || || || ||||||||||| || || Sbjct 77046 TTACCGGCGAAGATCAGGCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTTG 76987 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||| | ||||||||| | || | ||| ||||||||| Sbjct 76986 GCCTTGACGTTCTCGATGGTGTCGCTAGCCTCGACCTCCAGAGTGATCGTCTTGCCGGTC 76927 Query 118716 AGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || ||||| ||||||||| || Sbjct 76926 AGCGTCTTGACAAAGATCTGCATGCCT 76900 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||| ||||||||||| || ||||| ||||| ||||||||| ||| || || || | Sbjct 75660 AGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTGACAT 75601 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 |||| ||||| || |||||||| | ||| | || ||||| ||||| || || | Sbjct 75600 TCTCGATTGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTGA 75541 Query 118726 CAAAAATCTGCAT 118738 | || |||||||| Sbjct 75540 CGAAGATCTGCAT 75528 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 ||||||| || |||||||| ||||| ||||| |||||||| || || || || | Sbjct 76760 AGATGAGGCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACAT 76701 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 |||| ||||| || |||||||| | ||| | || |||||||| ||||| || | Sbjct 76700 TCTCGATCGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 76641 Query 118726 CAAAAATCTGCAT 118738 | ||||||||||| Sbjct 76640 CGAAAATCTGCAT 76628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433815257149888