Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_002371.2 Length=41724 Score E Sequences producing significant alignments: (Bits) Value seq2629 168 2e-37 seq2270 113 1e-20 seq2561 102 2e-17 >seq2629 Length=15125 Score = 168 bits (186), Expect = 2e-37 Identities = 461/700 (66%), Gaps = 12/700 (2%) Strand=Plus/Minus Query 31035 GCGTCAACAACTACGCCAATGATTTTGCAGTTTCCGTTGATTTCTATCATCGGATATTGT 31094 || || || || ||||| || ||||| ||||| || || || |||||| | || || Sbjct 7417 GCATCTACTACAACGCCTATTATTTTACAGTTCCCATTAATGGGTATCATGCGGTACTGA 7358 Query 31095 GGGTTTAATGGTTTTAAAAACTTTCGGCCTGCATCCATAACTAATTTTTTGAATGTGGCC 31154 || || | ||||||| | | ||| || ||||| | | ||| ||| |||||||| Sbjct 7357 GGATTCAGAGGTTTTAGATATTTTGAACCAGCATCTGTTATGTATTGTTTAAATGTGGCT 7298 Query 31155 TCGTTTTCACCTTCTAATTTTGCAACAACCAGCTTGCCGTTTCTTGGTTCGACTTCGGGA 31214 || || || || ||| || ||||| | ||| || || ||| || | | || Sbjct 7297 TCATTATC------TAGTTTGGCCACAACTAACTTACCATTAACTGGCTCTATATTTGGG 7244 Query 31215 TCAACCAGAATTATCATTCCTTCTGGAATGCTTAACCCTGCCGGTGCTGTCATAGAGTCA 31274 ||||| | || | ||| ||||||||||| || | |||| || | |||||||| ||| Sbjct 7243 TCAACTAATATAACCATCCCTTCTGGAATACTAAGTCCTGAAGGAGACGTCATAGAATCA 7184 Query 31275 CCTTGGACATCAAGCCAAAATGAATCTTCTGAACAATCTACAGTGGTGTCGTGCCAGTTC 31334 || ||||| | |||||| ||||| | ||||| || || || |||| ||||| Sbjct 7183 CCGATCACATCCAACCAAAAAGAATCACCAGAACAGCTGACGGTAGTTTCGTACCAGTCA 7124 Query 31335 TCTATCGCGCGCTTGTGATAAGGTTCTACAGCTTCCATCCATTGCCCTGCGCTTACCCAA 31394 ||||| | | ||||| || || || || ||||| |||| | || ||||| ||||| Sbjct 7123 TCTATAGATAGTTTGTGGTATGGCTCCACGGCTTCGCTCCAATTACCAGCGCTAACCCAG 7064 Query 31395 CTGATAAGAGGGTATGATCCTCTTGGCTCATGCCTACTATGATAGGCAACGTT-TGTCTG 31453 || ||||||||||| ||||||| | ||| || | | | ||| || | | Sbjct 7063 CTTATAAGAGGGTACTCACCTCTTGAGTGATGAAATTTAGAAAATGAAACATTATCACCA 7004 Query 31454 GCTTAA--ATCTCCTTTCAGCAAATAGTCAGGGGAGCACTGAAGAGCCTTCGAAAGTGCC 31511 | | | || ||| ||| | || ||||| | ||| ||||| | | | ||| Sbjct 7003 CCGTCACTATTACCTGTCATAAGGTATTCAGGTGCACACCCAAGAGAACTTGCTAATGCT 6944 Query 31512 AACAGGTTCTCCCCATTTGGCTCAGTCTCCGAGCGCTCCCATTGCGATATTGCAACATTA 31571 | | ||| | |||| ||| || | || |||||||| || || | | | Sbjct 6943 ATTAAGTTTCCTCCATCTGGTGATGTTATCCCGCCTTCCCATTGAGAGATGGATGCGTGT 6884 Query 31572 GACACTCCCACCATCTTACCAAGAGCGGCTTGTCTAATCTTGAGtttttttCTTCGAGCG 31631 || || || || ||||| | || || || ||| | | ||| || | ||||||||| Sbjct 6883 GATACGCCGACTTTCTTAGCCAGCGCAGCCTGTGTGAGCTTAAGCTCTTTTCTTCGCAAT 6824 Query 31632 CGAATACGCTCACCCATCAATTGTGT-ATTCATAGTTAAGTCATCTTAAATAAACTTGAC 31690 ||| || || || || | |||| | |||||||||||||| ||||||||| |||||| Sbjct 6823 TTAATGCGGTCGCCGAT-ATTTGTTTCATTCATAGTTAAGTAATCTTAAATCTTCTTGAC 6765 Query 31691 TAAAGATTCCT-TTAGTAGATAATTTAAGTGTTCTTTAAT 31729 | |||| |||| | || |||||||||| |||| ||| Sbjct 6764 TTAAGAGTCCTAAAAATACATAATTTAAGATGTCTTAAAT 6725 Score = 140 bits (154), Expect = 9e-29 Identities = 122/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 36189 GATAAACTGAAGATTCGAAAACTCGCCTTAAAGCCCCGCAGTTACTGGATTAAACAAGCC 36248 |||||||| || || || | || |||| ||||||||||| |||||||||||||| Sbjct 152 GATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTTATTGGATTAAACAAGCA 93 Query 36249 CAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCGCGACTTACCATGTATCTCGTGC 36308 ||||||||||| ||||| | ||||||||||||||||| || || ||||| || || ||| Sbjct 92 CAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATTTGCCATGCATATCATGC 33 Query 36309 GGAACGCTCACGTCTGCTCAGTGGGATGCCGG 36340 |||||| | ||||||||||||||||| || Sbjct 32 GGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 >seq2270 Length=26257 Score = 113 bits (124), Expect = 1e-20 Identities = 179/253 (71%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 40742 AAGTGGCACTCACCGACAAGCAAGAAATGTTCTGTCATGAGTACCTCATCGATTTAAACG 40801 || |||||||||||||||| ||||| ||||| |||| ||||||||| | ||||| |||| Sbjct 24123 AAATGGCACTCACCGACAAACAAGAGATGTTTTGTCGCGAGTACCTCGTTGATTTGAACG 24064 Query 40802 CCACGCAAGCGGCGATTTGGGCGGAG-ATATC--TAAGATTGC-TATCACACTGCCCAAG 40857 |||| |||||||| ||| | |||| | | | | |||| ||| | | |||||| | Sbjct 24063 CCACACAAGCGGCCATTCGTGCGGGGTACAGCGAGAAGACTGCAAACCGCACTGCGTCTG 24004 Query 40858 AAAAAATGTCAAAACCTTACGTCCAGCCAAGGATTATTGTTCTGTAAACTTAAAGCAATG 40917 | || ||||||||||| | | || || | ||| || || || || || |||||| Sbjct 24003 AGAACTTGTCAAAACCTGATATTCAATCACGCATTGCTGAACTCAAAGCTGAACGCAATG 23944 Query 40918 ATCTGGTTGGTATAAATGTGACACATGTCATGAATCGACTAGTTGAGATAGTCCAGATGG 40977 | ||| || || |||| | |||| | || || |||||||| || | || |||| Sbjct 23943 AAGAGGTGGGAATTAATGCCGCCTATGTATTAAAGCGGCTAGTTGAAATTGATCAAATGG 23884 Query 40978 GCGTGCTCGGCAT 40990 || |||| ||| Sbjct 23883 ATGTCCTCGACAT 23871 >seq2561 Length=11062 Score = 102 bits (112), Expect = 2e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 15324 ATGCATCCCACTGAAGAAACTTAACGGCTGGCTGTTCAGCATTAACCCTGAGAAAGTTCG 15383 ||| || || ||||| |||||||| |||||||||||||| |||||||| | ||||||| Sbjct 10797 ATGTATTCCGCTGAAAAAACTTAATGGCTGGCTGTTCAGTATTAACCCCGCGAAAGTTAA 10738 Query 15384 TGCAGACATCCGTGACAAACTGATTAAGTACCAGGAAGAATGCTTCACCGTTCTGTATGA 15443 ||| ||| || | ||||| | | |||| ||||||||||| || | | ||| |||| Sbjct 10737 AGCAAGCATTCGCAATAAACTCACTCAGTATCAGGAAGAATGTTTTATTGCCCTGCATGA 10678 Query 15444 TTACTGGACGAAAGGT 15459 || ||||| || ||| Sbjct 10677 CTATTGGACCAAGGGT 10662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133390663229248