Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq348 196 2e-45 >seq348 Length=55286 Score = 196 bits (216), Expect = 2e-45 Identities = 349/507 (69%), Gaps = 3/507 (1%) Strand=Plus/Minus Query 3704 ACGATCACCATCTACGAGCCGATTGGCTACGACTGGTGGACCGGTGAAGGTGTCACGGCA 3763 || ||| ||||||||| ||| ||| | ||||||||||| |||| || |||| ||| Sbjct 21548 ACCATCGGCATCTACGACGTGATCGGCGAGGACTGGTGGACAGGTGGCGGCTTCACTGCA 21489 Query 3764 AAACGCATTGCTGGCGCTCTGCGCTCCATCGGCAACGATGTCGATGTGACCGTGAACATC 3823 || ||||| | | || || || || | || || | || || ||||| |||| Sbjct 21488 AAGCGCATGTCCGCGGCACTTCGTTCGTTGGGTAAGGGCC-CG--GTTACCGTCGCCATC 21432 Query 3824 AACAGCCCCGGCGGCGACGTATTCGAAGGCCTGGCCATTTACAACCTGCTGCGCGAGCAC 3883 ||| || ||||||||| | |||||||| |||||||| ||| |||| ||||||||| Sbjct 21431 AACTCTCCGGGCGGCGACATGTTCGAAGGACTGGCCATGTACTCGATGCTTCGCGAGCAC 21372 Query 3884 AAGGGCAAGGTCACGGTGAACATCATCGGCCTGGCTGCCTCTGCCGCCTCTTTCATCGCC 3943 |||| ||||||||||||| | || || | || |||||||| ||||| |||||||| Sbjct 21371 CCGGGCGAGGTCACGGTGAAGGTGATGGGTATCGCGGCCTCTGCAGCCTCCATCATCGCC 21312 Query 3944 ATGGCGGGGGATGAAATCCGCATCGGCCGCGCCGCCTTCCTGATGATCCATAACGCCTGG 4003 ||||| || || | | | || | || | | ||||||||||||||| ||| |||| Sbjct 21311 ATGGCCGGCGACCACGTGCAGATTGCGCGATCGGGCTTCCTGATGATCCACAACTGCTGG 21252 Query 4004 CTGATCGCCATGGGTAATCGGAATGATCTCCGTGAGATAGCCGATTGGCTGGAGCCATTC 4063 || | ||| || || || | || || || ||||| || || ||||||||||||| Sbjct 21251 CTCCTGGCCGCAGGAAACCGCCACGAGCTGCGCGAGATCGCTGACCAGCTGGAGCCATTC 21192 Query 4064 GACATGACGCTGGCTGACATTTACGCACAGCGCACGGAAATCGACATCGACGACATCGTG 4123 ||| | | |||| ||| | ||||| | |||| ||| | | | ||| | Sbjct 21191 GACCAGGCAATGGCCGACGTGTACGCGGCCAGGACGGGCGAAGACCTTAAGGCCATGCAG 21132 Query 4124 AAACAGATGGACGCCGAGACCTGGATCGGCGGGCGCGAAGCCGTCGACAAAGGGTGGGCA 4183 || | ||||| |||| ||| |||||||| | | ||||| | |||| | ||| Sbjct 21131 AAGCTCATGGATCGCGAGTCCTACATCGGCGGCAGTGCTGCCGTTTCCCAAGGCTTCGCA 21072 Query 4184 GATGCCTTCCTGGAGTCCGACGAGATC 4210 ||| | | || || |||||||||||| Sbjct 21071 GATTCGCTGCTCGATTCCGACGAGATC 21045 Score = 167 bits (184), Expect = 8e-37 Identities = 318/463 (69%), Gaps = 9/463 (2%) Strand=Plus/Minus Query 10631 AGAAGCT-GGCGCCTTCACTGGGGCTCCTATCGAGAAAGAGATCACCTGGAAACAGGGCG 10689 ||||| | ||||| ||||| || || | || || || ||| ||||| ||||||| Sbjct 16543 AGAAGGTCGGCGCGTTCACCGGCCGCCCGGTGGAAAAGGAAATCCGTTGGAAGCAGGGCG 16484 Query 10690 ATAAGGAACTGACTGCAACCGTGTACGTCCGGCC-CTTGTCGTACAGCACAGCTGTTTCT 10748 | |||| ||||| || |||||||| || ||||| || | | ||| | || || || Sbjct 16483 ACGAGGAGCTGACCGCCACCGTGTATGTGCGGCCGCTGGGATTCCAGG-CGGCGGTGTCG 16425 Query 10749 GACCTTCTG---GCCATGAATGGCAAGGTGGATGGGGTAGCGGGTCGGATAGCCGCGTCA 10805 ||| | ||| |||| ||| |||| || || || || || || || || || Sbjct 16424 GACGTGCTGTCGGCCACGAA---CAAGCACGACGGCGTGGCCGGCCGCATCGCGGCCAGC 16368 Query 10806 ATCGTGGATGAAGAGGGTAAGCCGGTATTCACGCCGGCAGATATCACCGGCGAGGCCGAT 10865 ||| || | || || ||| |||| ||||| || || ||||| |||||||||||| Sbjct 16367 ATCTGCGACCAGGACGGCAAGGCGGTGTTCACCGTTGCTGACATCACAGGCGAGGCCGAT 16308 Query 10866 CCCGGTCGCGGCGCGCTGGATGGAAACCTGACCATCGCCCTGCTCACCGTGATCGCCGAG 10925 || | |||||||| |||| || ||| || | | || ||||| | | |||| |||| Sbjct 16307 CCGGAGCGCGGCGCATTGGACGGCAACTTGTCGGTGGCGCTGCTGATGGCAATCGGCGAG 16248 Query 10926 GTGAACAACCTGGGAAAGACGACCAGCTCAGCGAACTAGATGAGGTGTGGCATGAGCTGG 10985 ||||||||||||||||| | || |||| | | |||||| ||||| ||||||| Sbjct 16247 GTGAACAACCTGGGAAAAGCTACGAGCTGACCCCGGAGGATGAGCTGTGGTGCGAGCTGG 16188 Query 10986 TGATGTGCGGGATTGGCGGCAGAACCATCGCAGAAGCCAAGTCGCGTCTCACCTACCGGG 11045 | | |||||| |||||| | | ||||| || || ||| || ||| || ||||| Sbjct 16187 TCCTCAACGGGATCGGCGGCCGCAGCATCGGTGAGGCGAAGGAACGCCTCTCCATCCGGG 16128 Query 11046 AGTTCCTGAGCTGGTGCAAGTTCCGGAGCAAGCGCGGGAGTCT 11088 |||||| | |||| || || ||| ||||||||| || || Sbjct 16127 AGTTCCAGCTCTGGAGCGTGTACCGAGCCAAGCGCGGCAGCCT 16085 Score = 100 bits (110), Expect = 1e-16 Identities = 238/352 (68%), Gaps = 6/352 (2%) Strand=Plus/Minus Query 3062 ACCATCGGCATCAATCCGGTCGATGCTCAGTTGCTGGAGACGCGAGAGCATGGCGTGATC 3121 || ||||||||||| |||| |||||| ||| |||| ||| |||| | | | ||| Sbjct 22199 ACGATCGGCATCAACCCGGCCGATGCCCAGCTGCTTGAGTCGCGCGCGTTTTCGGTGGAG 22140 Query 3122 GAGATTTGCAGATGGTTCGGGGTGCCGCCCTGGATGATCGGCCAGACCGACAAGGGGAGC 3181 ||||| ||| | |||||| | || || || | ||| | ||||| |||| ||| || | Sbjct 22139 GAGATCTGCCGGTGGTTCCGTGTTCCTCCGTTCATGGTTGGCCATGCCGAGAAGTCGACC 22080 Query 3182 AACTGGGGGACAGGGCTTGAACAGCAGATGCTCGCGTTCCTGACATTCTCGATCAGCTCG 3241 | |||||| || ||| | || ||||||||| ||| |||||||| || | || || | Sbjct 22079 AGCTGGGGCACGGGGATCGAGCAGCAGATGATCGGCTTCCTGACTTTTACCCTCGGC-CC 22021 Query 3242 ATCACCA-ATCAGATTCAGCAGTGCG-TCAACAAGCGGCTGCTAACTGCGCCCGAGCGGA 3299 | | | || ||| | ||| ||| ||| ||| || || | || | ||||| | Sbjct 22020 CTGGCTACGTCGAATTGAACAG-GCGATCAGTAAGGATCTTCTGTCGCCGGCTGAGCGCA 21962 Query 3300 TTCGCTATTACGCCGAGTTCTCACTTGAGGGGTTCCTGAAGGCTGATAGCGCTGGTCGCG 3359 || ||| | ||||| | | || ||| | || || || ||||| ||||||| Sbjct 21961 CCAAGTACTACCCGAAGTTCGCGGTAGAAGGGCTTCTTCGCGCCGACAGCGCGGGTCGCG 21902 Query 3360 CTGCCTGGTACAGCA-CTATGGCGCAAAACGGTTTCATGACCCGCAACGAAG 3410 | |||| ||| ||| | |||| | ||||| || |||||||| |||||| Sbjct 21901 CGGCCTTCTAC-GCAGCCATGGTCAACAACGGCATCCTGACCCGCGACGAAG 21851 Score = 80.6 bits (88), Expect = 1e-10 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 13485 GGCATGGCTCACGATGGGATTGATGCTGTTCCGGAGACCGGCACCTGGTTACTCCAGAAG 13544 |||||||| ||||| || || || |||||| ||||| || || ||| | || |||||| Sbjct 13675 GGCATGGCCCACGACGGTATCGACAGTGTTCCCGAGACAGGAACTTGGCTGCTGCAGAAG 13616 Query 13545 GGCGAGAGGGTGACGACGGCAGAGACGAGCGCAAAGCTCGAC 13586 ||||||||||| || || || | || ||||| ||||| ||| Sbjct 13615 GGCGAGAGGGTCACCACTGCGGCCACCAGCGCCAAGCTGGAC 13574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180435463181184