Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2252 105 4e-18 seq2162 87.8 1e-12 seq1859 87.8 1e-12 seq1739 84.2 1e-11 >seq2252 Length=1130325 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | || ||||| || | ||| ||| ||||| |||||||||||||| Sbjct 563511 TCCACCGCGAAGGCGGAGAACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGA 563570 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | |||||| || ||||| || || ||||||||||| ||| Sbjct 563571 CAAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGG 563630 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | || | || | | |||||| Sbjct 563631 AATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGAC 563690 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || ||||| | ||| ||||| ||||| ||||| Sbjct 563691 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563738 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||||||||||| ||| | || || | |||||| || ||||| Sbjct 562235 TTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 562294 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || ||||||||||| ||| | || |||||| || |||||| ||| | | Sbjct 562295 GATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTTGCCTTGACGTT 562354 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | ||||| |||| |||||||| || ||||| | ||||||||| Sbjct 562355 CTCAATGGTGTCCGAACCCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTTTTCAC 562414 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 562415 GAAGATCTGCAT 562426 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || || ||||| | || ||| ||||| ||||||||||| Sbjct 562930 TCCACCACGGAGACGAAGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCACT 562989 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || ||||||||||| || ||||| || | ||||||||||| ||| Sbjct 562990 GAGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGG 563049 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | || | || | | |||||| Sbjct 563050 AATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGAC 563109 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || ||||| || || |||||||| ||||| Sbjct 563110 CTCGAGGGTGATAGTCTTTCCCGTGAGGGTCTTGACAAAGATTTGCAT 563157 >seq2162 Length=74254 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || ||| | || ||||||||||| || ||||| Sbjct 49648 TCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAG 49589 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || || || || || ||| | | |||||||| ||||| ||| | || Sbjct 49588 ATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTCACATTC 49529 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||||||||| ||| || || | |||||||| || ||||| | |||||||| Sbjct 49528 TCGATCGAATCGGATCCTTCAACCTCGAGAGTGATGGTCTTTCCGGTCAACGTTTTCACG 49469 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 49468 AAGATCTGCAT 49458 >seq1859 Length=77309 Score = 87.8 bits (96), Expect = 1e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 34246 CTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCT 34304 ||| |||||||| ||||| ||||||||||| | |||| || |||||||| |||| Sbjct 72681 CTTACCTGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATTCCT-TCCTTGTCTTGAATCT 72623 Query 34305 TTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGG 34364 | ||| | | | |||| |||| | |||||| || | |||||| ||||| || | Sbjct 72622 TGGCCTTCACGTTCTCGATCGTGTCGGAGGCTTCGACCTCGAGCGTGATCGTTTTACCCG 72563 Query 34365 TGAGAGTTTTCACAAAGATCTGCATCG 34391 |||| ||||| || ||||||||||||| Sbjct 72562 TGAGGGTTTTGACGAAGATCTGCATCG 72536 >seq1739 Length=92152 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 34246 CTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTT 34305 ||| || || || |||||||| ||||| || || | || |||||||| ||||| Sbjct 76221 CTTACCGGCAAAGATGAGCCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTT 76162 Query 34306 TTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGT 34365 ||| | || | |||| ||| | | |||||| |||| |||||||| |||||||| Sbjct 76161 CGCCTTGACATTCTCGATCGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGT 76102 Query 34366 GAGAGTTTTCACAAAGATCTGCAT 34389 ||| || ||||| ||||||||||| Sbjct 76101 GAGCGTCTTCACGAAGATCTGCAT 76078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323060723171840