Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1889 107 4e-18 seq2373 93.3 9e-14 >seq1889 Length=309471 Score = 107 bits (118), Expect = 4e-18 Identities = 203/295 (69%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850 ||||||| |||| | ||||| | |||| | || | || ||||| ||||| Sbjct 15625 GCGATTGTGTACGACCGCGATTTCGCGTACACCTATTTCGGGTTTAAAACCCTGGAACGG 15566 Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910 ||||| | || || || | |||||| || || || || |||||| | ||||| Sbjct 15565 TCGTACTTGCTGAAGATCAACGGCAAGGTCACTGAGCGTCCCCAACACATGCTTATGCGT 15506 Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTACACCGGAA 248968 ||||| || || | |||||||| ||||| || || ||| |||| || |||| | | Sbjct 15505 GTGGCCGTGGGAGTCCACAAGGAGGACATCGAC-GC-TGCCATCGAAACCTACAACCTCA 15448 Query 248969 TGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACA 249028 || || |||||| | || || || | || || |||||||||||||| ||| ||| Sbjct 15447 TGTCGGATCGCTGGTTCACCCACGCATCGCCCACCCTCTTCAACGCCGGAACCTGCAAGC 15388 Query 249029 ATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCAT 249083 ||| |||| || ||||| ||||| | ||||| || ||||| |||||||||| Sbjct 15387 CCCAGATGAGTTCCTGCTTCCTTCTCACAATGCACGATGACTCCATCGACGGCAT 15333 >seq2373 Length=453403 Score = 93.3 bits (102), Expect = 9e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 ||| || | | |||| | || || ||||| ||||| ||| |||||||| | | ||| || Sbjct 384379 TGTGCGGCCTACAAGATTGTCATACTGGATGAGGCCGACGCCATGACGACTGCCGCCCAA 384320 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 |||| | ||| |||||||||| | | ||| |||||| || | ||| | ||| Sbjct 384319 GCCGCTTTGCGCAGAACGATGGAAAGCGAATCCAGGACGACGCGATTCTTCCTCATCTGC 384260 Query 254322 AACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 |||||| | |||| ||||| | || || ||||||| ||||||||||| || || Sbjct 384259 AACTACATCTCGAGAATCATTGATCCTTTGACTTCTCGATGCGCCAAGTTCCGTTT 384204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073726998141952