Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2162 122 7e-23 seq2252 120 2e-22 seq1739 98.7 8e-16 seq179 86.0 5e-12 >seq2162 Length=74254 Score = 122 bits (134), Expect = 7e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| |||||||| |||||||||||| ||| ||| | || || || || Sbjct 48618 GTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCTTCGAGCTG 48559 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| ||||| || | | ||| ||||| ||||| | |||||||||||| || || Sbjct 48558 CTTTCCAGCGAAGATGAGTCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTT 48499 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | ||| |||||| ||||| | ||| |||||||||||||| Sbjct 48498 CGCCTTCACGTTCTCAATGGAGTCTGAACCCTCAACCTCAAGGGTGATCGTCTTGCCCGT 48439 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTT 45339 || |||||||| ||||||||||| || Sbjct 48438 AAGCGTCTTCACGAAGATTTGCATCTT 48412 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| ||| ||| | || |||| || Sbjct 49302 GTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTG 49243 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| |||||| ||||||||||| | || |||||||| || || Sbjct 49242 CTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCTTGGATCTT 49183 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 || || | | | |||| |||||| ||||| | || ||||| ||||| || Sbjct 49182 AGCTTTCACGTTTTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATCGTTTTGCCTGT 49123 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||||||||| |||||||| ||||| Sbjct 49122 CAGAGTCTTGACAAAGATCTGCAT 49099 >seq2252 Length=1130325 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| |||||||||||| || ||| | || || || || Sbjct 562223 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTG 562282 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| |||| ||||| ||||| || || | |||||||| ||| || || Sbjct 562283 CTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTT 562342 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | | ||||| |||||| ||||||| ||| || ||||| || || Sbjct 562343 TGCCTTGACGTTCTCAATGGTGTCCGAACCCTCGACCTCCAGGGTGATGGTCTTTCCGGT 562402 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||| ||||| ||||| ||||| Sbjct 562403 CAAAGTTTTCACGAAGATCTGCAT 562426 Score = 109 bits (120), Expect = 4e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| | || |||| | || || || || ||||||||||| Sbjct 563776 TCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAG 563835 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| ||||| || |||||||| | |||||||||||| || || ||| || Sbjct 563836 ATCAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTT 563895 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| | || ||||| | ||| || ||||| ||||| || ||||| || Sbjct 563896 TCGATAGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTTCCCGTGAGGGTCTTGACG 563955 Query 45326 AAGATTTGCATGT 45338 ||||||||||||| Sbjct 563956 AAGATTTGCATGT 563968 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| ||||||||||| | || ||| | || |||| || Sbjct 562954 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCACTGAGGGTGCGGCCATCTTCCAACTG 563013 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| ||||| ||||| ||||| || || | ||||||||||| || || Sbjct 563014 CTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGGATCTT 563073 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | || ||||| | ||| || ||||| ||||| Sbjct 563074 AGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAGTCTTTCCCGT 563133 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| Sbjct 563134 GAGGGTCTTGACAAAGATTTGCAT 563157 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || ||||| |||||||| |||||||||||| || ||| | || || Sbjct 563530 ACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCG 563589 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| |||| ||||| ||||| || || | ||||||||||| Sbjct 563590 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGG 563649 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | || ||||| | ||| || ||||| Sbjct 563650 ATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTT 563709 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||| ||||||||||| Sbjct 563710 CCGGTCAAAGTCTTCACGAAGATTTGCAT 563738 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || ||||| || ||||| |||||||||||| ||| | | || || Sbjct 562721 ACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTCCTTCCATCCTCG 562780 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| ||||| ||||| || || || || | ||||| || || | Sbjct 562781 AGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGGGATTCCCTCTTTATCTTGA 562840 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | ||||| |||||| || || | || || ||||| Sbjct 562841 ATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACCCTCAACTTCAAGAGTGATGGTCTTT 562900 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||| || |||||||| Sbjct 562901 CCGGTCAAAGTCTTCACGAAAATTTGCAT 562929 >seq1739 Length=92152 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| |||| ||||| ||||| || || | |||||||||||| || || Sbjct 77046 TTACCGGCGAAGATCAGGCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTTG 76987 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | | |||| ||||||| || ||||||||||| ||| Sbjct 76986 GCCTTGACGTTCTCGATGGTGTCGCTAGCCTCGACCTCCAGAGTGATCGTCTTGCCGGTC 76927 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||| |||||| Sbjct 76926 AGCGTCTTGACAAAGATCTGCATG 76903 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || ||||| |||| ||||||||||| ||||| | || ||||||||| || || Sbjct 75395 TTACCAGCGAAAATCAGACGCTGTTGGTCTGGAGGGATCCCTTCCTTGTCCTGGATCTTG 75336 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | |||| | |||| ||||||| ||| || ||||| ||||| Sbjct 75335 GCCTTGACGTTTTCGATGGTGTCGCTGGCCTCGACCTCCAGGGTGATGGTCTTCCCCGTA 75276 Query 45314 AGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || || ||||||||||||||| Sbjct 75275 AGGGTTTTGACGAAGATTTGCATGTTG 75249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || ||||| || |||| || || ||||| ||||| | || ||||||||| ||||| Sbjct 75946 TTACCGGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTG 75887 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | |||| ||||||| || ||||||||||| || Sbjct 75886 GCCTTGACGTTCTCAATGGTGTCGCTTGCCTCGACCTCCAGAGTGATCGTCTTGCCGGTG 75827 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 || |||||||| ||||| |||||| Sbjct 75826 AGCGTCTTCACGAAGATCTGCATG 75803 >seq179 Length=148825 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/129 (76%), Gaps = 6/129 (5%) Strand=Plus/Minus Query 8766 CTGAATCACGCGGTGTTGCTGGTGGGATACGGGGTGAAAAACGATGTGCCATACTGGATT 8825 |||||||||||| | |||||||| |||| ||| ||| | |||| | |||||||||| Sbjct 15905 CTGAATCACGCGATTTTGCTGGTAGGATTCGGCGTGGAGAACGGCACGAAATACTGGATT 15846 Query 8826 TTGAAAAACAGTTGGGGCGCAGAGTGGGGAGAGGAGGGTTATTT---CAGGGTGCAGAGG 8882 |||| ||||| ||||| | ||| ||||| || | || ||||| || ||||| |||| Sbjct 15845 GTGAAGAACAGCTGGGGAGAAGAATGGGGCGAAGGTGGGTATTTCCGCATGGTGC-GAGG 15787 Query 8883 GACAAGAAT 8891 | |||||| Sbjct 15786 G--AAGAAT 15780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395061409900144