Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2252 82.4 6e-11 >seq2252 Length=1130325 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| || || || |||||||| || ||||||||||||| Sbjct 562702 TCCACCGCGAAGGCGGAGAACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGA 562761 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | | ||| || | || || || || |||| | | || ||||| ||| Sbjct 562762 CAGGGTCCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGG 562821 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTC---ACCGGGCTC 18274 | || || ||||| ||| | | |||||| | | ||| ||||| ||| ||| Sbjct 562822 GATTCCCTCTTTATCTTGAATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACC---CTC 562878 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| |||||| | || |||||||| || || || |||||||||||| Sbjct 562879 AACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCATT 562930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379330758997680