Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1889 172 5e-38 seq4 131 1e-25 seq2162 118 9e-22 seq2252 98.7 9e-16 >seq1889 Length=309471 Score = 172 bits (190), Expect = 5e-38 Identities = 334/490 (68%), Gaps = 10/490 (2%) Strand=Plus/Plus Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 ||| ||||| || ||||||||||| || ||||||||||||||||||| ||||| || | Sbjct 15149 CTTGTTGCCTCCTTGATCGACGTAGCGAGCCGTGTTGTTGTACACTCGGAGCATGGGGAT 15208 Query 23554 GAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTG 23613 || |||||||| | |||| ||||| | | | || || |||| | ||| Sbjct 15209 CAGGCCGTTGGAGGTGCCGTTGGTTCCCGCAATCATGGTTCCCGAGGCGCGAATGCAGTG 15268 Query 23614 AACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTC 23673 ||| || || ||||||||| |||| || || |||| ||||| || ||||| ||| Sbjct 15269 CGCGTTGAGTCCGATGCCTCCGGCCGACTTGGAGATCAAGGCGCACTG--CCAGAGGGTC 15326 Query 23674 --GTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGC 23731 | ||||||| |||||| ||| || | | | || | ||| || ||| ||| || Sbjct 15327 TTGAAGATGCCGTCGATGGAGTCATCGTGCATTGTGAGAAGGAAGCAGGAACTCATCTGG 15386 Query 23732 GCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGAC 23791 | ||| || |||| ||| || || || ||||| || || | | || |||| Sbjct 15387 GGCTTGCAGGTTCCGGCGTTGAAGAGGGTGGGCGATGCGTGGGTGAACCAGCGATCCGAC 15446 Query 23792 ATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACG 23851 || || ||||| || |||||||| || || |||||||| ||| | || | ||| || Sbjct 15447 ATGAGGTTGTAGGTTTCGATGGCAGCGTCGATGTCCTCCTTGTGGACTCCCACGGCCACA 15506 Query 23852 CGCATCATCATGTATTGAGGTCTCTC---GACCGTGACGCCGTTAATTTTGAACAGATAT 23908 ||||| | ||||| ||| || | ||| |||| | |||||| || || | || || Sbjct 15507 CGCATAAGCATGTGTTGGGGACGCTCAGTGACCTT---GCCGTTGATCTTCAGCAAGTAC 15563 Query 23909 GAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATG 23968 || |||| || |||||||| || |||||| || || || || |||| ||| || Sbjct 15564 GACCGTTCCAGGGTTTTAAACCCGAAATAGGTGTACGCGAAATCGCGGTCGTACACAATC 15623 Query 23969 GCCGAATTCA 23978 || || |||| Sbjct 15624 GCTGAGTTCA 15633 Score = 167 bits (184), Expect = 2e-36 Identities = 507/786 (65%), Gaps = 25/786 (3%) Strand=Plus/Plus Query 22432 CAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTG 22491 ||| || |||| || ||| |||| || | || || |||||||| | ||| || || Sbjct 13982 CAAGTCCTTGAGCAAGTGAGGGTTGACGATCTGGAAGTCGCCGGAAAGGACACGACGGCT 14041 Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 ||| |||||||| ||| |||| |||| || || |||||||| || || ||||| || || Sbjct 14042 GTAGATGTTGGAGGTGTACGGCTCGATCGACTCGTTGTTTCCGAGGATTTGAGCAGTGGA 14101 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACT 22611 || || |||||||| || | ||| || ||| | | |||||||| | || || Sbjct 14102 CGCCGTGGGCATCGGAGCAACCAGAAGGCTGTTGCGGACTCCGTGCTTGGCGATCTTCTC 14161 Query 22612 CTTGAGCATCGACCAGTCCCACAGATCGG--------ACGG------CGTCA-CATTGTC 22656 ||| | | | |||||| ||| | || | |||| |||| | || Sbjct 14162 CTTCAAAGTAGCCCAGTCGCACTGGTCCGTGGGAACCACGGGCTTGCCGTCCTCGGTGGT 14221 Query 22657 CCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGG 22716 |||||| |||||||| | ||||||||| || |||| ||||||||| ||||| || || Sbjct 14222 CCACATCTCGTATTGGAGCACGCCGCGGCTGACCGGAGAGCCTTCGTAGGTTTCATAGGG 14281 Query 22717 ACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAA 22776 || || | | | || || |||||| | ||| | | | ||| || || || ||||| Sbjct 14282 TCCGTACAGCTCCGCCAGCTCGCAGGAAGACTCGAGGGAGGCGTGGTAGATGGTTTCGAA 14341 Query 22777 GATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAA 22836 |||| |||||||| ||| ||| | || | | || | ||||||| || || Sbjct 14342 GATTCGCTTGTTCATGTCGCGGGCTTCAGGACTGGTGAAGGGGAAGCGCATCAGCATAAA 14401 Query 22837 CGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTT 22896 |||||||| | ||||| || || || || || || |||| | || || || Sbjct 14402 GGCGTCCGCGAGTCCCTGGACTCCGATTCCAATGGGACGGTGCCGCTTGTTGGAGGTTTC 14461 Query 22897 TGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAAT 22956 || || || | |||||| | || ||||| | |||| | ||| | || || | Sbjct 14462 GGCTTCAGGAACAGGATAATAGTTGCCGTCGATGATCTTGTTGAGGTTGCGAGTGACGAC 14521 Query 22957 TTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACA-----ACAAAC 23011 || || || || ||||| || | | |||| | || || Sbjct 14522 CTTAGTGATCGCGTGGAGCTTCTCGTAGTCG--AAGGTC---TTGTCCTCCTTGACGAAT 14576 Query 23012 TTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCT 23071 ||| | || ||||| || | ||||| ||||| || ||||| |||| ||||| Sbjct 14577 CGGTTCAACGCAATCGAAGCTAAGTTGCACACGGCGACTTCGTCGGGAGACGAGTACTGG 14636 Query 23072 ACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTT 23131 || || || || || || ||| ||||| ||||| |||| || |||||| || Sbjct 14637 ACGATCTCAGTGCACAGGTTGGAGCACTTGATCGTTCCCAGGTTCTGCTGGTTCGACTTG 14696 Query 23132 CGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATG 23191 || ||||| | ||||||||||||||||| || || || || |||| ||| || || | Sbjct 14697 CGGTTGCAGGCGTCCTTGTAGAGCATGTAAGGAGTTCCAGTTTCGATCTGGGAGGTGACG 14756 Query 23192 ATCGCT 23197 ||| || Sbjct 14757 ATCTCT 14762 >seq4 Length=195412 Score = 131 bits (144), Expect = 1e-25 Identities = 216/312 (69%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 ||||||||||||||||| ||||| || ||||| || || || || || || |||||| Sbjct 71233 ATCGCGTTCGCCGCCGTTGAAGGAATCTTCTTCTCTGGGTCGTTCGCTGCCATCTTTTGG 71292 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 | ||||| || ||||| ||||| || || || |||||||| |||| || ||||| Sbjct 71293 CTCAAGAAGCGAGGCCTCATGCCTGGACTCACTCACAGCAACGAACTGATTTCCCGCGAT 71352 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACG 58157 || || || || ||| ||||| ||||| |||||| || | | | || || | Sbjct 71353 GAAGGCCTTCACCGTGACTTTGCCTGCCTCATGTACAAGTACCTGGAGGAGAAGCCTTCC 71412 Query 58158 CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 | | | | || ||| |||||| || || || |||||| | |||| | ||| Sbjct 71413 CCGAAGCAGGTCAAGGAAATTATCGATGAAGCTGTGAAGATCGAGCAGGAGTACCTTACC 71472 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 ||||| || || |||| |||| |||| |||||| ||| | ||| || || |||||| Sbjct 71473 GAAGCTCTTCCAGTGGACATGATCGGGATGAACCGGGATCTCATGGCACTTTATATTGAG 71532 Query 58278 TTTGTTGCCGAC 58289 || || || ||| Sbjct 71533 TTCGTCGCTGAC 71544 >seq2162 Length=74254 Score = 118 bits (130), Expect = 9e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||||||||||||||||||||| | || || || || Sbjct 49099 ATGCAGATCTTTGTCAAGACTCTGACAGGCAAAACGATCACTCTTGAGGTCGAGGGTTCT 49158 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | || ||||||||||| | || ||||||||| Sbjct 49159 GACACCATTGAAAACGTGAAAGCTAAGATCCAAGACAAGGAAGGAATTCCTCCCGACCAG 49218 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || |||||||| ||||||||||| ||| |||| || || ||| Sbjct 49219 CAGCGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACTTTGAGTGACTACAAC 49278 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || || || || ||||| || || || || |||| Sbjct 49279 ATCCAGAAGGAGTCCACTCTCCACCTTGTTCTCCGACT 49316 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || |||||||||||||| | || || || || Sbjct 48871 ATGCAGATTTTCGTGAAGACCCTCACGGGCAAAACGATCACATTGGAAGTCGAGGGCTCT 48930 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || |||||| |||||| | || ||||| ||||| | || || || ||| Sbjct 48931 GATTCGATCGAAAACGTCAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGATCAG 48990 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || ||||| || || | || || ||| |||| || |||||| Sbjct 48991 CAGCGATTGATCTTTGCTGGGAAGCAACTTGAGGATGGCCGCACTTTGAGTGACTATAAC 49050 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| |||||||| ||||| |||| || Sbjct 49051 ATCCAAAAGGAATCGACGCTTCACTTGGTCCT 49082 >seq2252 Length=1130325 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| || || || |||||| | || || || || Sbjct 563385 ATGCAAATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAGGTCGAGGGATCT 563326 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||||| || || | || || || ||||| | || || |||||| Sbjct 563325 GATACTATCGAAAACGTGAAGGCCAAGATCCAAGATAAAGAAGGAATTCCCCCAGACCAG 563266 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| || || ||||||||||| ||| || ||| || ||| Sbjct 563265 CAGCGCTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACTTTGTCCGACTACAAC 563206 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || |||||||| |||||||| || ||| | || | || |||| Sbjct 563205 ATCCAGAAGGAATCGACCCTTCATCTCGTCCTTCGTCTCCGTGGTGGTA 563157 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| || || || |||||| |||| || ||| | || Sbjct 563738 ATGCAAATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 563679 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||| || | || || |||||| Sbjct 563678 GACACCATCGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAG 563619 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || ||| | || || ||| || ||| || ||| Sbjct 563618 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAAC 563559 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || || |||||||| || Sbjct 563558 ATCCAGAAGGAATCTACGCTCCATCTGGTTCT 563527 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || || || || |||||| |||| || ||| | || Sbjct 563157 ATGCAAATCTTTGTCAAGACCCTCACGGGAAAGACTATCACCCTCGAGGTCGAAGCCTCT 563098 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||| || | || || |||||| Sbjct 563097 GACACCATCGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAG 563038 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| || || ||||||||||| || | || || || ||| Sbjct 563037 CAGCGCTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCAGTGACTACAAC 562978 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || ||||| || ||||| || || ||| Sbjct 562977 ATCCAGAAGGAATCCACCCTTCACCTCGTTCTT 562945 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||| |||| || || || ||||| | || ||||| || Sbjct 562929 ATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTTGAGGGTTCG 562870 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| ||||| || || || || || || || | || || || || Sbjct 562869 GACACCATTGAAAACGTCAAGGCAAAG-ATTCAAGATAAAGAGGGAATCCCCCCAGATCA 562811 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| || || ||| | || || | ||| || ||| || || Sbjct 562810 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGGACCCTGTCCGACTACAA 562751 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || |||||||| || || |||||||| || Sbjct 562750 CATCCAGAAAGAATCTACGCTCCATCTGGTTCT 562718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445750441562880