Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq2606 255 1e-63 >seq2606 Length=3143 Score = 255 bits (282), Expect = 1e-63 Identities = 754/1156 (65%), Gaps = 25/1156 (2%) Strand=Plus/Plus Query 16979 TATCATCACGGTGTCCGGGTCCAAGAGATCAATGACGGGACCCGCCCCATTCGCACCATC 17038 ||||||||||| ||||| || || || || || || || || || |||| ||| | Sbjct 224 TATCATCACGGAGTCCGTGTACAGGAAATTAACGAAGGTACTCGTACCATCACTACCGTT 283 Query 17039 GCCACCGCGATCATCGGCCTGGTAGCCACCGCCGAAGACGCCGACGCCACCGCCTTTCCA 17098 |||||| ||| | || |||| || || ||||| |||| | | |||||| Sbjct 284 AGCACCGCTATCGTAGGTATGGTTTGTACTGCTCCTGACGCAGACGAAAAAACATTTCCA 343 Query 17099 CTCGATACGCCGGTACTCATCACCAACGTGCAGGCTGCCATCGGCAAGGCGGGCACCAGC 17158 | |||| || || || || || |||| | |||| |||||||| || | Sbjct 344 TTAAATACTCCAGTCCTGATTACTGACGTTATGAGCGCCAGTGGCAAGGCCGGGGAAAAA 403 Query 17159 GGTACGCTGCCCGCAAGCCTGCAAGCAATCGCCGACCAGGCCAACGCCGCCACTGTGGTG 17218 || || || | || ||| |||| ||||| | ||||| | | |||||||| Sbjct 404 GGCACTTTGTCTACATCTCTGAAAGCCATCGCTGCTCAGGCTCTGCCTGTGACTGTGGTT 463 Query 17219 GTGCGGGTGAAGCCGGGCGAGGATGAAGCCGCGACCAATAGCGCGGTCATCGGCGGCGTC 17278 || || ||| | ||| | ||||| | |||| ||| ||||||| || || Sbjct 464 GTTCGTGTGGAAGAAGGCAAATCTGAAGAAGAAACCATTAGTAACATCATCGGTGGTGTT 523 Query 17279 AGCGCCGATGGCAAGTACACCGGCATGAAGGCCTTGCTTGCCGC-CAAGGCCCGCTTGGG 17337 | || || || ||| | ||||| ||| |||| || | || || ||| ||| ||| || Sbjct 524 ACCGATGAAGGTAAGAAAACCGGTATGCAGGCGCTGTTGGCGGCACAAAGCCAGCTCGGT 583 Query 17338 CGTGGTACCGCGCATCCTCGGCGTGCCGGGCCTGGATACCCAGCCGGTCGCTACCGCACT 17397 || ||| ||||| || || || || || ||||| | | || || ||| | | ||| Sbjct 584 -GTTAAACCACGCATTCTGGGTGTTCCAGGTCTGGACTCAAAACCAGTTGCTGCTGAACT 642 Query 17398 CATCGCCATCGCCCAGCAACTGCGCGCCTTCGCTTATGTCTCCGCCAGCGGCTGCAAGAC 17457 | ||| || || |||||||| || | || |||||| ||| |||||||| | Sbjct 643 CGCCGCTATTGCTAAGCAACTGAAAGCAATGGCATATGTCAGCGCTTATGGCTGCAAAAA 702 Query 17458 AAAGGAAGAGGCCACCGCCTACCGCGAGAACTTCGCCGCGCGCGAAGCCATGGTGATCTG 17517 | || | | | || || || ||||||| ||| || | ||| | || || Sbjct 703 TATCTCTGAAGTTATCAAATATCGTGAAAACTTCGGTCAGCGTGAGGTAATGTTAATTTG 762 Query 17518 GCCGGACTTCCTGACGTGGAGCACCGTGGTCAACCAGACCGTGCCTGCGCCAGCTGTTGC 17577 ||| || ||||||| |||| || | || || | || |||||| | ||| ||| Sbjct 763 GCCTGATTTCCTGAGATGGAACAAAG--GTGAAGTT-ATCGCACCTGCGACGGCTTATGC 819 Query 17578 CCAGGCACTGGGCTTGCGTGCCCGGATCGATCAGGAGGTCGGTTGGCACAAGACCCTGTC 17637 |||||||||||||||| ||||| | || ||| |||||||| ||||| || Sbjct 820 ------ACTGGGCTTGCGTGCCAAAATCGACGAAGAAACCGGCTGGCACAAAACCCTATC 873 Query 17638 GAACGTCGCCGTCAACGGCGTGACCGGCATCAGCGCCGACGTGTTCTGGGACCTGCAGAG 17697 || || | || |||||||| || || | || || || |||||||| ||||| || Sbjct 874 CAATGTGGGTGTTAACGGCGTAACGGGTCTATCTGCTGATGTCTTCTGGGATCTGCA-AG 932 Query 17698 C-CCCAGCACCGACGCCAACTACCTCAACGAGAACGAGGTCACCACCCTGGTGCAGGAAG 17756 | | | || || || | || ||| |||| | |||| || ||| | | || Sbjct 933 CGACTGGAACTGAGGCTGATCTGCTGAACCAGAATCACATCACAACACTGATCCGCAAAA 992 Query 17757 GGGGATTCCGTTTCTGGGGTTCGCGCACCTGC---AGC---------GATGATCCGCTGT 17804 || || |||||||||||||| ||||| ||| || || || | |||| Sbjct 993 ACGGTTTTCGTTTCTGGGGTTCACGCACTTGCGCTGGCTCTGCTTCTGAGGACTCACTGT 1052 Query 17805 TCGCCTTCGAGAACTACACCCGCACCGCCCAGGTGCTGGCCGACACTATCGCCGAAGCGC 17864 || | ||||| | ||||||||| ||||| ||||| ||||| ||||| || || || |||| Sbjct 1053 TCCCATTCGAAAGCTACACCCGTACCGCTCAGGTACTGGCTGACACCATGGCTGACGCGC 1112 Query 17865 ACATGTGGGCGGTTGACAAGCCCATGCACCCGTCACTGGTGCGCGACATCCTTGAGGGCG 17924 | |||||||| | ||||| || || ||| || ||||| |||||||| | || ||| Sbjct 1113 ATATGTGGGCAATCGACAAACCGCTGACCCCATCGCTGGTACGCGACATTATCGAAGGCA 1172 Query 17925 TGAACGCGAAGTTCCGCGAGCTCAAGGGGCTCGGTCTGATCATCGACGCCCAGGCCTGGT 17984 | || || |||||||| || || || | | ||| ||||| |||| | ||||| Sbjct 1173 TCAATGCTAAGTTCCGTGAACTGAAAGCGGGCGGCTACATCATTGACGGTCGTTGCTGGT 1232 Query 17985 ACGACCCCAACGTGAACGACAAGGACACGCTCAAGGCCGGCAAGCTGCGCATCACCTACG 18044 | ||| ||| | ||||| || ||||| || || || ||||| ||| |||| |||| Sbjct 1233 ATGACGACAAAATCAACGATAAAGACACCCTGAAAGCAGGCAAACTGACCATCGATTACG 1292 Query 18045 ACTACACCCCGGTGCCGCCGCTCGAGGACCTGACCTTCTTCCAGAAGATCACCGACAGCT 18104 |||| ||||| || ||||| || || || ||| || |||| || || || || | Sbjct 1293 ACTATACCCCTGTACCGCCACTGGAAAACATGATGTTACGCCAGCGCATTACAGATAGTT 1352 Query 18105 ATCTCGTCGACTTCGC 18120 | || | || ||||| Sbjct 1353 ACCTGATGGATTTCGC 1368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113730531893056