Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 105 8e-18 >seq4 Length=195412 Score = 105 bits (116), Expect = 8e-18 Identities = 254/381 (67%), Gaps = 5/381 (1%) Strand=Plus/Minus Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 |||||||| ||||| ||||| ||||| || |||||||| |||| |||||| || || || Sbjct 71324 GTGAGTCCAGGCATGAGGCCTCGCTTCTTGAGCCAAAAGATGGCAGCGAACGACCCAGAG 71265 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTG 33752 |||||||||||||| || || || || || |||| | |||| || || || Sbjct 71264 AAGAAGATTCCTTCAACGGCGGCGAACGCGATAACGCGAGTTCCAAATGAAGCGTTCTTG 71205 Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 || ||||| ||||||| || |||||||| || | ||||| | | | ||| Sbjct 71204 TCGCCGATCCAGCGCAGAGCCCAGTCCGCCTTCTTCTTGATGCAAGGGAACTCGTGGATG 71145 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 || || || ||| ||| || || ||| || |||| || |||| Sbjct 71144 GCGTTGAAAAGAACGTTGCGCTCCTTTGGATCGACGACGTAAGCTTCAATCATCTTGGAG 71085 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 ||||| ||||| || ||| ||| | ||||||||| || | |||||| | || || Sbjct 71084 TACATCTCCGAGTGGATGCCTTCGACGGCCATCTGGAAGCTGTAGAAGGACAAGGCTTCT 71025 Query 33933 GTAATC-TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 | ||| || || ||| ||| || || | | |||||||| || |||||||| Sbjct 71024 GGCATCTTGACCTCCTGGGTGAAA-CGCTCGACGAGGTTTTCATTGACGATTCCATCGGA 70966 Query 33992 GGCTGCAAAAAACGCCAATAC 34012 ||| ||||| || ||||| || Sbjct 70965 GGCGGCAAAGAAAGCCAAAAC 70945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629795052529920