Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq2600 196 1e-45 >seq2600 Length=29343 Score = 196 bits (216), Expect = 1e-45 Identities = 534/815 (66%), Gaps = 7/815 (1%) Strand=Plus/Minus Query 11145 TGGCGGAGCAATAATCACAAAACTTGCCCCATCGCCACTGTGTGCGGGGTCGAATCCGCC 11204 ||| || |||| |||| |||| ||| ||||||| | |||| ||||| || ||||| Sbjct 20333 TGGGGGCGCAACAATCGCAAACGTTGATGTATCGCCAGAGCGTGCAGGGTCAAAACCGCC 20274 Query 11205 CCAAACTTCACGATCACCAAAAGGGCGATCCGCTTTCGGGTTAAAGTCTTTCCATTTCGA 11264 ||| |||||||| |||||||| ||||| ||| | |||||| ||||| |||| Sbjct 20273 CCATACTTCACGCTCACCAAATGGGCGCGGCGCATCAGGGTTATGGTCTTCCCATAAGTG 20214 Query 11265 AATATCTACACCACATTTTAAAAGTTGATGAACGGTGAAAATAGAATCCGCATCATCAAT 11324 |||||| || |||||| | | |||||| | || | ||| | || || | Sbjct 20213 AATATCAACGCCACATCTATCTAATTGATGGTATTTAAATACAGATGCGCCACTGTCCAC 20154 Query 11325 CCAAACGCACATATAAAGCTGATTAAACGCATATTTGCTATAGCGTTGTTTC--AGTTTT 11382 | ||||||||| | | | ||||| | || | |||| || || | || | Sbjct 20153 AAACACGCACATAAACAACATGTTAAAAGAATCAGGGTTATAT--TTATTGCGTAGCCTG 20096 Query 11383 TCAATGTTAAATAACGTGCCCGCACCGCCTTTTAGTGCGTCTTCAATGGTTACCACATAA 11442 || ||| | ||| || |||||| |||| || || |||| || | ||||| Sbjct 20095 TCGATGCTGGCTAAGTTGAA---ACCGCCATTTATCGCATCCTCAAGCGTAATTACATAT 20039 Query 11443 CGCCACTGACCATCTGGACAAAGTCGCCCACCGTCACGCAATTCTGCAAAAGTTGGGAAT 11502 ||||| |||||||| || ||| |||||||| || |||||||| |||| | || ||| Sbjct 20038 CGCCATTGACCATCAGGGCAATCACGCCCACCATCCCGCAATTCATCAAACTTAGGAAAT 19979 Query 11503 GGCACGTTTTTGCGTTTAGGGTCGCCATCTCGCCAGTTATCGCCACTCCAGAACGAATAA 11562 | ||||| || | ||||| | ||||||| | || || |||| || | ||| Sbjct 19978 ACAATTTTTTTACGCTCGGGGTCATTACCTCGCCATTCGTCACCCGTCCAAAATGGATAG 19919 Query 11563 GATTCGTGGAATTTTGAAGACGGTGTGCTGAAATAGGTTTCGCGCCATTTCGCGTGTGTT 11622 | || ||| | | || ||| ||||| || ||||| | | |||||| Sbjct 19918 GCGGGATGTGTTTTCGCACTGGGAGTGGAAAAATAAGTCGTTCGCCAATGGTCATGTGTT 19859 Query 11623 GCCATCGCAGAAGCCACATCATTGAATCGTTGGAAATCTCGAATCCATGCGTATTCGTCA 11682 ||||| ||||| | || ||||| || | || ||||| | | ||| ||||||||| Sbjct 19858 GCCATTGCAGAGGATACTTCATTAAACCTTTTAAAATCAGGTACCCAGAAATATTCGTCA 19799 Query 11683 CCATACACATGGCCACTGTTACCTTGTGACGTGTTTTTGTTGGTCGATAAAAAATGCAGT 11742 | ||| | ||| || |||| ||| | || ||||| |||||||||||||| ||| | Sbjct 19798 CAATATAAATGCCCGCTGTAGGATTGCGCTGTATTTTTATTGGTCGATAAAAAGCGCAAT 19739 Query 11743 TCCGCGCCATTGCTTAAAATAATCGGGTTGCCAGTCAGCTCAACACCGAAATATTCCCTC 11802 || || ||||| |||||| || || || || || | || |||||| | | | Sbjct 19738 TCAGCTCCATTACTTAAACGGATAGGATTCCCTGTTAAGGTGACGCCGAAAAACTTCTCG 19679 Query 11803 GCCATCTTCACAATGTAATTTTTAAAGATTTCTGCTTGCCGTTTACTGGCGGATAAGAAA 11862 || || |||||||| ||| ||| | ||| || || |||| ||||| || || Sbjct 19678 GCAATATTCACAATATAAGACCGAAAAACTTCGGCCTGAGGTTTTGATGCGGACAAAAAG 19619 Query 11863 ATTTGATTGTCACCGCTGAAAATTGCATCTTCCAACGCTTCAAAACTAAAATAATAGGTC 11922 | |||| | || | || |||||||| ||||||||||| |||||| | || Sbjct 19618 AGTTGAGGTTTTCCAGTTAAGCACGCATCTTCAAACGCTTCAAACGCAAAATACCAAGTA 19559 Query 11923 GCCCCAATTTGGCGCGATTTCAGAATATTGCGCAC 11957 || || ||||| || || | |||||| ||||| Sbjct 19558 GCACCGATTTGACGGCTCTTTAAAATATTTCGCAC 19524 Score = 178 bits (196), Expect = 3e-40 Identities = 549/828 (66%), Gaps = 35/828 (4%) Strand=Plus/Minus Query 17848 TTAGTGCCTTTATTATTTGGCAATGAAACAGGCGTATTGGCAGGGCGATTAGCAAATCGT 17907 ||||||||| || | || |||||| | || || || ||||| || ||| || ||| Sbjct 13595 TTAGTGCCTACGTTTTGGGGAAATGAAGCGGGTGTGTTAGCAGGCCGTTTATGTAACCGT 13536 Query 17908 GCCGTCACCGTGGCAGACAGCCCAGCACGGGTACAAACAGGCGCGTTAGTGAGCCTAGGC 17967 || |||||| | || || || ||||| ||||| ||||||| || ||| | ||||| Sbjct 13535 GCGGTCACCATTGCCGATAGTCCAGCTCGGGTTAAAACAGGTGCTTTACTTGATTTAGGC 13476 Query 17968 AGTGCCAATAAACCACTGGATAAAGACAGAAACGAGCTTACTCTTGCGCATTTAAAATCC 18027 |||| |||| || ||| | | || || | | || || | | | Sbjct 13475 AGTGTTGATAAGCCGAAAGATGGTAGCGGTGTGGAAATTGATTTAGC-CACCTTGCAGGC 13417 Query 18028 CTTG--AAACCGCGCGTTATTCTGTGCCGATGTGGTACCCCGATTATGACGGCTAT-TAC 18084 ||| ||| | | |||||| || ||||||||||||||||| |||||||| ||| || Sbjct 13416 GTTGGAAAAACTC-CGTTATAGCGTACCGATGTGGTACCCCGACTATGACGG-TATGTAT 13359 Query 18085 TGGGCAGACGGTCGCACGTTAGATGTAGAAGGGGGCGATTATCAAGTGATTGAGAACCTG 18144 ||| | || |||||||| |||||||| || || || |||| ||||| |||||| |||||| Sbjct 13358 TGGTCTGATGGTCGCACCTTAGATGTTGAGGGTGGTGATTTTCAAGCGATTGAAAACCTG 13299 Query 18145 CGTGTAGTGGATAAAGTGGCGCGTAAAGTGCGTTTATTAGCGATTGGGAAAATTGCAGAT 18204 || | || |||||||| |||||| || || || || |||| ||||||||||| Sbjct 13298 CGCATTGTCGATAAAGTCGCGCGTCGCGTTCGCTTGCAGGCTATTGCTAAAATTGCAGAC 13239 Query 18205 CGTTCTTTTAACTCCACAACATCAAGCACGGAATATCACAAAAATTATTTCGC-CAAACC 18263 || ||| ||| ||| || || | ||| || ||| ||||| || | ||| Sbjct 13238 CGCAGTTTAAACAGTACACCAAACAGTATCGAAACCCATAAATCCTATTTTGCTCGCACC 13179 Query 18264 GCTTCGTGATATGAGCAAAT-CCGCAACCATCAACGG---CAAGGATTTCCCAGGCGAAT 18319 | ||||| ||| || | |||| |||||||| || | ||||| || |||| Sbjct 13178 -ATGCGTGAAATG-TCACGTAGCGCAGAAATCAACGGTGTCACG---TTCCCTGGTGAAT 13124 Query 18320 GTATGCCACCGAAAGATGATGCCATCACGATTGTATGGCAAAGCAAAACCAAGGTAACCA 18379 ||| ||| ||| |||||| || | || ||||| ||| ||| |||| | || | Sbjct 13123 GTAAGCCGCCGCAAGATGGTGACGTCGTAATTGTGTGGAAAACTAAAAATACCGTTGAAA 13064 Query 18380 TTTACATCAAGGTTCGCCCTTACGATTGCCCGAAAGAGATTACGGCAAATATTTTCTTAG 18439 ||||||||| || | | || || |||||||||| ||||||| | ||| || | | Sbjct 13063 TTTACATCACCGTAAGAACGTATGAATGCCCGAAAGGAATTACGGTCAGTATCTTACTGG 13004 Query 18440 ATTTAGACAGCTTAGGAGAGTAAACAATG---GAACG--TATTAGTGGAATGAGTTTTGA 18494 || | ||||| |||||| | |||| |||| ||| || ||| ||||| Sbjct 13003 AT---GCTAGCTT-GGAGAGCGCATAATGAGCCAACGTTTATCAGGTCAAT--CCTTTGA 12950 Query 18495 CTTCTATTTATTCGGGTTGCCT--ATTCATGCAGAGTCTATCAGTTTATCCATTACAGAT 18552 |||| || | ||| || || ||||| | || | || |||||||||| ||| Sbjct 12949 CTTCAATATCGACGG--TGACTTAATTCACGTCGAAAAAGTGAGCCTATCCATTACCGAT 12892 Query 18553 AATAGTACCGTTGTACAAACACGTGGAATTCCAGATGGTTGGGTAAGCGGTGATGTGGCA 18612 || | | | | ||||| || || || ||||| |||| || |||||||| Sbjct 12891 AACACCGCAGCCGCGCAAACGCGCGGTATGCCAGACGGTTTTGTCGCGGGTGATGTAAGC 12832 Query 18613 GCAGAAGGCGAAATTG-AATTAGATGCAAAAAATTTCTCAAAATTATC 18659 ||||| || ||||| | ||||| ||| ||||| | | | |||||| Sbjct 12831 GCAGAGGGTGAAATCGAAATTA---GCACAAAATATTTTGAGATTATC 12787 Score = 111 bits (122), Expect = 3e-20 Identities = 222/325 (68%), Gaps = 8/325 (2%) Strand=Plus/Minus Query 24584 CTGCAGTGAACGCATT-TTAAATTTAATCGCCTATCAACGCGACGTAGAACGATTTGAGG 24642 ||||| |||| |||| ||||| || | || |||||||| || | | || ||| | Sbjct 7139 CTGCACCGAAC-CATTATTAAACTTGTTGGCGTATCAACGGGATATCCAGCGTTTTAATA 7081 Query 24643 GAGAGCCGTTAGAGCTATTCCGCAAGCGCGTGAAATATGCCTTTTTAAATGCGAAAGATG 24702 || || || || ||| ||| ||||||||||||||||| ||| | ||||| || || Sbjct 7080 ATGAACCCTTGGATTTATACCGTAAGCGCGTGAAATATGCGTTTATTAATGCTAAGGACT 7021 Query 24703 CTGGCAGTAAAGCGGGCTTTATCCGCATTTTTGAACGCCTTGGCATTGGCTATGTAGAAA 24762 | ||||| ||||| ||||| ||||||| ||||||||||| |||||||||| |||| Sbjct 7020 CAGGCAGCGTCGCGGGATTTATTGACATTTTTAAACGCCTTGGCGTTGGCTATGTCGAAA 6961 Query 24763 TTGAAGA---ACGGTTCGATAGGGAAAATTGGGATGTGATCAAAATTCGAATCAGTGATT 24819 || | || || | |||| | |||||||||| || | | || ||||||| Sbjct 6960 TTAATGAGCGACAGCCTGATATTG---ATTGGGATGTCATTATTTTACGGGTCAGTGACG 6904 Query 24820 CACAATTAGCAAAGAAAACAGAATTACTCAATTTAATCATTCGAAAATATGGCCGCACTT 24879 ||| | || || || | || || | ||| || || |||| || || || | Sbjct 6903 GGCAAATTGCGAATAACCCTGATTTGTTGCTGCAAATTATCCGTCAATACGGGCGAACCT 6844 Query 24880 GTCGGCGTTATACCTTTGAAGTGAT 24904 | || || ||| ||||||||| || Sbjct 6843 GCCGCCGCTATCGCTTTGAAGTCAT 6819 Score = 86.0 bits (94), Expect = 1e-12 Identities = 261/398 (66%), Gaps = 4/398 (1%) Strand=Plus/Minus Query 23770 CAGGTTATTACCGTATTTTGCCAGAATCTATCGCAGGGGTAAGTGCG-GTAGAAAATTTA 23828 ||||||||| ||||||||| || | | || |||||| | | ||| || |||| | Sbjct 7963 CAGGTTATTTCCGTATTTTACCCGTGGCGATTGCAGGGATT-GAGCGCGTTCAAAACGAA 7905 Query 23829 GAAGATTGGCTAACATCGCCAGGTGCTGACAGA-GAAACTAACGACGAATTACGAGAACG 23887 || | ||| || |||||||| || || |||| | || | || || || || || Sbjct 7904 GATAACTGGTTATTGGTACCAGGTGC-GAATGACGAAAGTGACAATGATTTGCGTGACCG 7846 Query 23888 TTATCGCACGCAATTTTCGAGTGTTGGGCAACACCATATTGACAGTGTTTACAAAGGCAT 23947 | |||| |||| | || || ||| | || | |||| || || || || Sbjct 7845 CTGCCGCAATCAATATAACTTAGTCGGTCAATATCACACTGACGCCGTATATCGCGGGAT 7786 Query 23948 GATTGCGAAAGTCGCCGCCTTATCGGTGGACAGAATTTATTTTAAACACGATGCACCACG 24007 |||||| || || | || |||| | ||| | |||| ||| || ||||| || || Sbjct 7785 GATTGCAAATGTTGTCGGCTTAAGCATTGACCGTATTTTCTTTTTGCATGATGCCCCTCG 7726 Query 24008 TGGGCCAGGTACAGCAAACGCTTATTTGTTATTGGACACGGGTGTAACCAGTCAGCCGTT 24067 ||| | || || || ||||| ||||| ||||| |||| || || | |||||||| || Sbjct 7725 CGGGGCGGGAACCGCTAACGCCTATTTATTATTAGACAGCGGCGTCGCAAGTCAGCCTTT 7666 Query 24068 TATTGATAAAGTCAATCGCCATGTACGTGACGAGGGTTTTCATGGACACGGTGACGATTT 24127 ||| || ||||| ||| || | || | || ||||| |||||||| ||| | Sbjct 7665 TATCGACAAAGTGAATGATTATATTAATGCGCAAGGCCACCATGGGCACGGTGATGATAT 7606 Query 24128 AATTTGCTACGCCATGCCAGAAACTAAACACAATTTAA 24165 |||| ||||||||||||| | |||| |||| Sbjct 7605 GCAGTGCTTTTCCATGCCAGAAACACAGCACACATTAA 7568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100700575056960