Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq2599 304 4e-78 seq2638 194 5e-45 >seq2599 Length=15424 Score = 304 bits (336), Expect = 4e-78 Identities = 673/998 (67%), Gaps = 25/998 (3%) Strand=Plus/Plus Query 16091 ATTAATCAACGCTGATTGCCTGGAATTTATCCAGACCTTACCGGAAAACTCTGTCGATCT 16150 |||||| |||| || | ||| |||||||| | ||| | ||||| |||| | | || || Sbjct 12603 ATTAATTAACGACGACTCGCTGCAATTTATCAAAACCCTGCCGGATAACTGTATTGACCT 12662 Query 16151 GATAGTCACAGACCCTCCATACTTTAAAGTGAAACCCGAA---GGCTGGGATAACCAGTG 16207 ||||| ||| ||||| || || || || ||| ||| |||||||| | ||||| Sbjct 12663 GATAGCCACTGACCCACCGTATTTCCGGGTTAAA---GAATGTGGCTGGGACAGGCAGTG 12719 Query 16208 GAAGGGCGACGATGACTACCTGAAATGGCTGGACCAGTGCCTTGCGCAGTTCTGGCGGGT 16267 | ||| | | | ||||| ||||||||| || || | ||||||||||||| Sbjct 12720 GGAGGATGTCACGGCTTACCTTGCGTGGCTGGACGAGATGCTGACTGAGTTCTGGCGGGT 12779 Query 16268 ACTGAAGCCTGCCGGAAGTCTTTACCTGTTCTGTGGTCATCGCCTGGCATCTGATATCGA 16327 |||||| || ||| || || || ||||||||||| || ||||| || |||| || Sbjct 12780 ACTGAAACCCAACGGCAGCCTGTATATGTTCTGTGGTTCCCGTCTGGCCTCAGATACTGA 12839 Query 16328 AATCATGATGCGCGAACGCTTTAACGTGCTGAACCATATTATCTGGGCGAAGCCGTCCGG 16387 | | |||| ||||| ||||| ||| | |||||||||||||||||||| |||||||| Sbjct 12840 GCTGCTCGTGCGTGAACGTTTTAATGTGTTAAACCATATTATCTGGGCGAAACCGTCCGG 12899 Query 16388 ACGCTGGAACGGATGC--AACAAGGAAAGCCTGCGGGCGTATTTTCCCGCCACAGAGCGT 16445 | ||| || | || || || |||||||||||| ||||||||| |||||||| || Sbjct 12900 CCCGTGG--CGCAGGCAGAATAAAGAAAGCCTGCGGATGTATTTTCCGGCCACAGAACGC 12957 Query 16446 ATTCTGTTTGCTGAACATTATCAGGGGCCATATCAGCCCAAACATGACGGCTATGCGGCA 16505 ||| | ||||| |||||||| || ||| | ||||| || ||| || |||||| | | Sbjct 12958 ATTATTTTTGCCGAACATTACCAAGGGTCGTATCACCCGAAAGGCGATGGCTATTCCAAA 13017 Query 16506 AAGGGGCGCGAGCTTAAACAGCACGTCATGGCCCCGCTGATTTCTTACTTTCGTGATGCG 16565 | | || | || |||||| || | ||||||||| |||||| |||||||| Sbjct 13018 CAATGCCGGGCCCTGAAACAGTCGGTATTTAAACCGCTGATTGATTACTTCCGTGATGCC 13077 Query 16566 CGTGATTCACTTGGGGTAACATCGAAACAGATAGCGGAAGCGACCGGAAAGAAAAACATG 16625 || | |||| || || || ||||| | || | || ||||| ||| | ||| Sbjct 13078 CGAAAAGCACTGGGCGTGACGGCGAAAGAAATTCATGCGGCAACCGGTAAG---CAGATG 13134 Query 16626 GCGTCACACTGGTTTGGTACAAGTCAGTGGCAGTTGCCGAACGAGGGTGATTACAACAAA 16685 || |||||||| || || || |||||||| || || | | || || | || Sbjct 13135 GCCAGTCACTGGTTCAGTGATAGCCAATGGCAGTTACCCAATGCTGTGGACTATCAAAAG 13194 Query 16686 TTGCAGGCGTTGTTTG--CGCGTGCTGCAGCAGAAAAACATCAGCGCGGGGAACTGGAAA 16743 |||||| |||||||| |||||| || ||| || || ||||| || || ||| | Sbjct 13195 CTGCAGGTGTTGTTTGACCGCGTG--GCTAAAGAGAAGCACCAGCGTGGTGAGCTGAATC 13252 Query 16744 AGCCACACCACCAGCTGGT--CAGCACATACAGTGAACTGAACCGGCAATATGCCAGCCT 16801 |||| || | |||| | |||| |||| || || || |||| | | Sbjct 13253 AGCCCCATTCTAATTTGGTGGAATCACA-CCAGT-TTTTGTCGCGCCAGTATGACGAGTT 13310 Query 16802 GCTGGAGGAATACAAATCACTGCGGCGTTATTTTTCTGTATCGGCTGCTGTTCCGTATAC 16861 || | |||||||| | | |||| || || || || |||| | || || ||||| Sbjct 13311 GCGGCAGGAATACGGTTTAATGCGCCGCCCGTTCTCAGTGACGGCAGACGTGCCTTATAC 13370 Query 16862 GGATGTCTGGATGTATAAGCCTGTACAGTATTACCTCGGCAAACATCCCTGTGAAAAACC 16921 || |||||| | | || || |||||||| | ||||| || ||||| ||||| || Sbjct 13371 CGACGTCTGGCAATTTGCACCCGTTCAGTATTATCCGGGCAAGCACCCCTGCGAAAAGCC 13430 Query 16922 GGCGGAGATGTTGCGTCAGATAATTACCA--CCAGCAGTCGTCCGGGAGATCTGGTTGCA 16979 || || || | | || ||| | ||| ||||||| || || ||| |||| || Sbjct 13431 TGCTGACCTGAT--GACACATATTATCCAGTCCAGCAGCCGGGAAGGGGATGTGGTGGCG 13488 Query 16980 GATTTTTTCATGGGGTCGGGTTCGACGGTCAAAGCAGCGATGGCGCTGGGACGTCGTGCA 17039 ||||| || ||||| || || | || | ||||| ||| || || ||||| | Sbjct 13489 GATTTCTTTATGGGTTCCGGGGCAACATTGAAAGCGGCGCTGAAACTCAATCGTCGGGTT 13548 Query 17040 ATTGGCGTTGAGCTGGAGACCGGGCGTTTTGAGCAGAC 17077 | |||||||||||||| | ||| ||| ||||||| Sbjct 13549 CTGGGCGTTGAGCTGGAAGAAGAGCGGTTTAAGCAGAC 13586 >seq2638 Length=7155 Score = 194 bits (214), Expect = 5e-45 Identities = 383/560 (68%), Gaps = 14/560 (3%) Strand=Plus/Plus Query 26769 TGAGCTGGCGCTGGAATTTGCCGAACAGGAAGAAATTGCCTTTACCAGTGGCGACGGCAG 26828 ||| ||| | | ||| ||||| || ||||| |||| || |||||| |||||||||| Sbjct 58 TGAACTGACACAGGAGTTTGCTGAGCAGGAGGAAAGCGCTTTTACCCACGGCGACGGCAA 117 Query 26829 CAAAAAACCAAAAGGTTTTCTGGCTTACG--AGTCCACCGATGAAGATGACAAGACCCGT 26886 || || |||||||| | ||||| |||| ||| | || || || |||||| ||| Sbjct 118 GAACAAGCCAAAAGGCCTGCTGGCGTACGGTAGTGAAGCGCTG--GACGACAAGGATCGT 175 Query 26887 GCGTTTGGCAAACTTCAGCACAT--TGCTTCCGGTGCGGCTTCCGGCGTGACTGCCGATG 26944 | || | | |||||| | |||| || | ||| || || || || | Sbjct 176 CAATGGGGTACGTTGCAGCACCTGTTGCTGAAAAAGC--CCACCGAGGTCACGGCAGACG 233 Query 26945 CGATCATTAAACTGATTTACACCCTGCGCAAGGCGCACCGCAGCGGCGCGAAGTTCATGA 27004 ||| | |||||||| ||||||||||||||| | |||||| ||| ||||| ||||||| Sbjct 234 ACATCCTGAAACTGATCTACACCCTGCGCAAGCCATACCGCAACGGGGCGAAATTCATGA 293 Query 27005 TGAACAACAGCAGCCTGTT-TGCCA--TTCGTCTGCTGAAGGATAACGACGGAAATTATC 27061 ||||||||| | ||||| | || | || |||||| || | | || ||||| | Sbjct 294 TGAACAACAAC---CTGTTATTTCAGGTACGCACGCTGAAAGACAGTCAGGGCAATTACC 350 Query 27062 TGTGGCGTCCGGGTATTGAGCTGGGTCAGCCTTCTTCTCTGGCAGGGTATGGCATCGTTG 27121 |||||| |||||| | | ||||| ||||| ||| | ||| || || || |||| | Sbjct 351 TGTGGCAGCCGGGTTTGCAACTGGGACAGCCCTCTGCGCTGCTGGGCTACGGTATCGCGG 410 Query 27122 AGAATGAGCAGATGCCGGATATTGCCGCCGATGCAAAAGCCATTGCGTTTGGTAACTTCA 27181 | || || ||| | ||||| | | || || ||| | | | ||| |||||||| | Sbjct 411 AAAACGAACAGTTTGCGGATTTGGGCGTCGGTGCCGTGCCGGTGGTGTTCGGTAACTTTA 470 Query 27182 AACGCGGCTATACCATCGTTGACCGCATCGGTACCCGTATCCTGCGCGATCCGTACACCA 27241 |||| |||| ||||| | ||| | | ||| ||||| ||||| |||||||||||| Sbjct 471 AACGTTGCTACACCATTTTGGACAGGCTGGGTGTACGTATGCTGCGTGATCCGTACACCC 530 Query 27242 ACAAACCGTTTGTGGGTTTTTATACCACCAAGCGAACCGGCGGTATGCTGGTGGATTCTC 27301 |||| |||||| | || || ||||||||||| || |||||||||| Sbjct 531 ACAAGCCGTTTATCCACTTCTACACCACCAAGCGGGTGGGTTCCCTGCTGGTGGACAGCA 590 Query 27302 AGGCGATTAAGCTGATGAAA 27321 | ||||| || ||| ||||| Sbjct 591 ACGCGATGAAACTGCTGAAA 610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136113770613216