Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2162 104 2e-17 seq1739 96.9 3e-15 seq2252 93.3 4e-14 >seq2162 Length=74254 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||||| ||||| ||| || || || || ||||| || ||||||| |||| ||||| Sbjct 48624 AACTAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCTTC 48565 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||| || ||||| |||| || | ||||| || ||||| ||||| || ||||| Sbjct 48564 GAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 48505 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | | ||| | ||| ||||||| ||| | |||||| Sbjct 48504 GATCTTCGCCTTCACGTTCTCAATGGAGTCTGAACCCTCAACCTCAAGGGTGATCGTCTT 48445 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | ||| || ||||| |||||||| Sbjct 48444 GCCCGTAAGCGTCTTCACGAAGATTTGCAT 48415 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | || ||||||| ||| || || ||||| |||||||| || ||| Sbjct 49097 CCTCCTCGAAGACGGAGGACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTC 49038 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || || || || |||||| |||||| || |||||||| || || Sbjct 49037 AAAGTGCGGCCATCCTCAAGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGG 48978 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | ||| | | ||| | | || | | ||| || Sbjct 48977 ATTCCTTCTTTGTC-TTGAATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGAC 48919 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||| ||||| || | || || ||||| || ||||| Sbjct 48918 TTCCAATGTGATCGTTTTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 48871 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | || | ||| | ||| | || ||||| || || |||||||| |||||| Sbjct 48869 CCTCCTCGGAGGCGAAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGCTC 48810 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || || || || || || |||| |||||||| ||||| || || Sbjct 48809 AAGGTGCGGCCATCCTCCAGTTGCTTTCCGGCGAAGATAAGACGTTGTTGATCTGGGGGA 48750 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | ||| | | || | | ||| | || || Sbjct 48749 ATTCCTTCTTTGTC-TTGAATCTTAGCTTTCACGTTCTCGATGGAGTCAGATCCTTCAAC 48691 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || ||||||||||| ||||| || ||||| Sbjct 48690 CTCGAGAGTGATGGTCTTTCCTGTCAACGTTTTCACGAAGATCTGCAT 48643 >seq1739 Length=92152 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| ||| |||||||||||||||| || ||||| |||||||| ||||| |||||| Sbjct 75946 TTACCGGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTG 75887 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | |||||| | | ||| ||||| | || | |||||||||||| Sbjct 75886 GCCTTGACGTTCTCAATGGTGTCGCTTGCCTCGACCTCCAGAGTGATCGTCTTGCCGGTG 75827 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||| || ||||| || ||||| Sbjct 75826 AGCGTCTTCACGAAGATCTGCAT 75804 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| ||| |||| || ||||||||||| ||||| |||||||| ||||| ||| || Sbjct 76220 TTACCGGCAAAGATGAGCCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTC 76161 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | |||||| ||| || ||||| | ||| | ||||||||||| Sbjct 76160 GCCTTGACATTCTCGATCGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGTG 76101 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||| || ||||| || ||||| Sbjct 76100 AGCGTCTTCACGAAGATCTGCAT 76078 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| ||| ||||||| || || || || ||||| |||||||||||||| ||| | || Sbjct 76496 TTACCGGCAAAGATCAGGCGCTGTTGGTCAGGAGGAATGCCTTCTTTGTC-TTGAATCTT 76438 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | ||| | |||||| ||| || ||||| | ||| | ||||||||||| Sbjct 76437 CGCCTTGACGTTTTCAATTGTGTCACTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGT 76378 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||| || ||||| || ||||| Sbjct 76377 GAGCGTCTTCACGAAGATCTGCAT 76354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| ||| |||| || ||||||||||| ||||| |||||||| ||||| ||| || Sbjct 76770 TTACCGGCAAAGATGAGGCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTC 76711 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | |||||| ||| || ||||| | ||| | ||||||||||| Sbjct 76710 GCCTTGACATTCTCGATCGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGTG 76651 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 | || || ||||| || |||||| Sbjct 76650 AGAGTCTTGACGAAAATCTGCATA 76627 >seq2252 Length=1130325 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||| |||| || || || || || ||||| || ||||| | |||| || ||| Sbjct 563758 ACTAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCG 563817 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || || ||||||| || |||||||||||||| ||||| || ||||| | Sbjct 563818 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGG 563877 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | ||| | ||||| | || || ||||| | ||| | ||||| Sbjct 563878 ATCTTAGCCTTGACGTTTTCGATAGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTT 563937 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || || ||||| |||||||| Sbjct 563938 CCCGTGAGGGTCTTGACGAAGATTTGCAT 563966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496046240908800