Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 107 3e-18 >seq4 Length=195412 Score = 107 bits (118), Expect = 3e-18 Identities = 293/445 (66%), Gaps = 9/445 (2%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||| | || || || || | ||| || || || || | ||| ||||||||| Sbjct 71386 ACATGAGGCAGGCAAAGTCACGGTGAAGGCCTTCATCGCGGGAAATCAGTTCGTTGCTGT 71327 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 |||||||| ||||| ||||| ||||| || |||||||| |||| || || ||||||| Sbjct 71326 GAGTGAGTCCAGGCATGAGGCCTCGCTTCTTGAGCCAAAAGATGGCAGCGAACGACCCAG 71267 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGT 50131 | |||||||||||||| || ||||| || || | || | ||| || || || | Sbjct 71266 AGAAGAAGATTCCTTCAACGGCGGCGAACGCGATAACGCGAGTTCC--AAATGAAGCGTT 71209 Query 50132 CATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 50186 | ||| ||||| ||||||| || |||||||| || | ||||| | | | Sbjct 71208 CTTGTCGCCGATCCAGCGCAGAGCCCAGTCCGCCTTCTTCTTGATGCAAGGGAACTCGTG 71149 Query 50187 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 50246 ||||| || || ||| ||| || || ||| || |||| || |||| Sbjct 71148 GATGGCGTTGAAAAGAACGTTGCGCTCCTTTGGATCGACGACGTAAGCTTCAATCATCTT 71089 Query 50247 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 50306 ||||| ||||| || ||| ||| | ||||||||| || | |||||| | || Sbjct 71088 GGAGTACATCTCCGAGTGGATGCCTTCGACGGCCATCTGGAAGCTGTAGAAGGACAAGGC 71029 Query 50307 CTCGGTAATC-TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGT 50365 || | ||| || || ||| ||| || || | | |||||||| || ||||| | Sbjct 71028 TTCTGGCATCTTGACCTCCTGGGTGAAA-CGCTCGACGAGGTTTTCATTGACGATTCCAT 70970 Query 50366 CACTGGCTGCAAAAAACGCCAATAC 50390 | ||| ||||| || ||||| || Sbjct 70969 CGGAGGCGGCAAAGAAAGCCAAAAC 70945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718243085976960