Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 174 2e-38 seq2120 131 2e-25 seq1889 104 3e-17 >seq4 Length=195412 Score = 174 bits (192), Expect = 2e-38 Identities = 312/449 (69%), Gaps = 10/449 (2%) Strand=Plus/Plus Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT- 125188 || || || | | ||||||| |||||||||| |||||||||||||||||| || || || Sbjct 70933 TTCATCTCCCGCGTTTTGGCTTTCTTTGCCGCCTCCGATGGAATCGTCAATGAAAACCTC 70992 Query 125189 GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCA 125248 || || || ||| | || ||| | | || ||||| | | || ||| ||| | ||||| Sbjct 70993 GTCGAG-CGTTTCACCCAGGAGGTCAAGATGCCAGAAGCCTTGTCCTTCTACAGCTTCCA 71051 Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCG 125308 || | || | | |||||||| |||||||| | ||||||| ||| | Sbjct 71052 GATGGCCGTCGAAGGCATCCACTCGGAGATGTACTCCAAGATGATTGAAGCTTACGTCGT 71111 Query 125309 CGATCC---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACG 125365 |||||| | | || || | | || || ||||| ||| || | | || | || Sbjct 71112 CGATCCAAAGGAGCGCAA---CGTTCTTTTCAACGCCATCCACGAGTTCCCTTGCATCAA 71168 Query 125366 TAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAG 125425 || ||||| | |||| | || ||||||| ||| | || |||| | | | Sbjct 71169 GAAGAAGGCGGACTGGGCTCTGCGCTGGATCGGCGACAAGAACGCTTCATTTGGAACTCG 71228 Query 125426 ACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGTAGTTTTGCGGCCATCT 125484 | | || ||||||||||| || || |||||||| || |||| | || || ||||||| Sbjct 71229 CGTTATCGCGTTCGCCGCCGTTGAAGGAATCTTCTTCTCTGGGTCG-TTCGCTGCCATCT 71287 Query 125485 TTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTC 125544 |||||||||||||||| || |||||||| ||||| || ||||| ||||| | || || | Sbjct 71288 TTTGGCTCAAGAAGCGAGGCCTCATGCCTGGACTCACTCACAGCAACGAACTGATTTCCC 71347 Query 125545 GAGACGAGGGCCTACACTGTGACTTTGCC 125573 | || || ||||| ||| ||||||||||| Sbjct 71348 GCGATGAAGGCCTTCACCGTGACTTTGCC 71376 >seq2120 Length=26249 Score = 131 bits (144), Expect = 2e-25 Identities = 236/344 (69%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGA---CTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTG 127158 || ||||| ||||||| ||||| ||||| |||| ||||| ||||| || || ||| Sbjct 10893 TTACGGTAGAAGATGAGGGCTCCG---CGAGGTCCTCGGAGAGATTTGTGGGTGGTCGTG 10949 Query 127159 GTCACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCA 127218 || || ||||| || || ||||| || | |||| || || | | || || Sbjct 10950 GTGACGATGTCCGCGTATTCGAAGGGCGACGGGACGACTCCTCCGGCGACGAGTCCAGCG 11009 Query 127219 ATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGT 127278 ||||| || |||||||||||||| ||| ||| ||||| |||| ||||| || Sbjct 11010 ATGTGGGCCATATCGGCCATCAGGTAGGCTCCGCACTTGTCGGCGATCTTGCGGAAGCGG 11069 Query 127279 CTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAAT 127338 ||||| | | | |||| ||||| || ||||||| | ||| | | | || |||| Sbjct 11070 GCGTAGTCGAGGTGGCGAGCGTAGCAGCTCATGCCGGCCACGATGACCTTCGGCCTGAAG 11129 Query 127339 AGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTG 127398 || | || |||| | || ||| | ||||||| |||||| || |||||||||||| Sbjct 11130 AGCATCGCGTTCTCCTCGAGCTTGTCGTAGTCGATGAGTCCGGTAGCGGGATCCACCTTG 11189 Query 127399 TACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTTGCG 127442 |||||||| ||||| |||| || || |||| || || || Sbjct 11190 TACGGCATCGACTCGAAGAAGATCGAAGTCACGGAGACCTTACG 11233 >seq1889 Length=309471 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 97134 TACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATC 97193 |||||||| || || || | || || ||| | || || | ||| ||| | | ||| Sbjct 14815 TACGAGCAGGAAGGACGTTTTAAGAAGCGTGTCAAGGCCCGTGCACTCTGGGAAGAGATC 14756 Query 97194 GTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGC 97253 || || | ||| | || ||||||||||| ||||| ||||||||||| || || ||| Sbjct 14755 GTCACCTCCCAGATCGAAACTGGAACTCCTTACATGCTCTACAAGGACGCCTGCAACCGC 14696 Query 97254 AACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTA 97313 || ||||| | || |||| || |||||| ||||||| |||||||| || || || Sbjct 14695 AAGTCGAACCAGCAGAACCTGGGAACGATCAAGTGCTCCAACCTGTGCACTGAGATCGTC 14636 Query 97314 GAGTACGCCTCTCCGGACGA 97333 ||||| | ||||| ||||| Sbjct 14635 CAGTACTCGTCTCCCGACGA 14616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741032670080640