Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq2638 210 6e-50 seq2766 158 3e-34 seq2664 86.0 2e-12 >seq2638 Length=7155 Score = 210 bits (232), Expect = 6e-50 Identities = 359/513 (70%), Gaps = 12/513 (2%) Strand=Plus/Plus Query 4956 TGAACTGGCGACCGAATTTGCCGAACAGGAGGAAATTGCCTTTACCACTGGTGACGGCAC 5015 ||||||| | || ||||| || |||||||||| || |||||| || ||||||| Sbjct 58 TGAACTGACACAGGAGTTTGCTGAGCAGGAGGAAAGCGCTTTTACCCACGGCGACGGCAA 117 Query 5016 CAAGAAGCCGAAAGGGTTCCTGGCCTATG--AATCCACCGAAGAGTCCGATAAGGCTCGT 5073 || ||||| ||||| | ||||| || | | | | || | ||| |||| |||| Sbjct 118 GAACAAGCCAAAAGGCCTGCTGGCGTACGGTAGTGAAGCGCTGGA--CGACAAGGATCGT 175 Query 5074 GCGTTCGGTAAACTTCAGCACATCGTATCCGGTGAAGCG-ACCGCGGTGACCGCTGATGC 5132 | |||| | |||||| | || | | |||| |||| ||| || || || | Sbjct 176 CAATGGGGTACGTTGCAGCACCT-GTTGCTGAAAAAGCCCACCGAGGTCACGGCAGACGA 234 Query 5133 CATCATTAAGCTGATTTACACGCTGCGTAAGGCGCATCGTACCGGCGCGAAGTTCATGAT 5192 |||| | || ||||| ||||| ||||| ||| | | || | ||| ||||| |||||||| Sbjct 235 CATCCTGAAACTGATCTACACCCTGCGCAAGCCATACCGCAACGGGGCGAAATTCATGAT 294 Query 5193 GAACAACAACAGCCTGTT-TGCCA--TCCGTCTGCTGAAAGATACCGAGGGTAACTATCT 5249 |||||||||| ||||| | || | || ||||||||| | |||| || || || Sbjct 295 GAACAACAAC---CTGTTATTTCAGGTACGCACGCTGAAAGACAGTCAGGGCAATTACCT 351 Query 5250 GTGGCGTCCGGGGCTGGAACTGGGACAGCCATCCTCACTGGCGGGTTACGGTATCGCTGA 5309 ||||| ||||| || ||||||||||||| || | ||| ||| ||||||||||| || Sbjct 352 GTGGCAGCCGGGTTTGCAACTGGGACAGCCCTCTGCGCTGCTGGGCTACGGTATCGCGGA 411 Query 5310 AAACGAACAGATGCCGGATATCGCCGCCGATGCGAAAGCCATTGCGTTTGGTAACTTCAA 5369 |||||||||| | ||||| | | || || ||| | | | ||| |||||||| || Sbjct 412 AAACGAACAGTTTGCGGATTTGGGCGTCGGTGCCGTGCCGGTGGTGTTCGGTAACTTTAA 471 Query 5370 ACGGGGTTACACCATCGTTGACCGTATCGGCACCCGCATCCTGCGCGACCCGTACACCAA 5429 ||| | |||||||| | ||| | | || || || ||||| || ||||||||| | Sbjct 472 ACGTTGCTACACCATTTTGGACAGGCTGGGTGTACGTATGCTGCGTGATCCGTACACCCA 531 Query 5430 CAAACCGTTTGTCGGTTTTTATACCACCAAGCG 5462 ||| |||||| || || || ||||||||||| Sbjct 532 CAAGCCGTTTATCCACTTCTACACCACCAAGCG 564 >seq2766 Length=35022 Score = 158 bits (174), Expect = 3e-34 Identities = 321/474 (68%), Gaps = 2/474 (0%) Strand=Plus/Minus Query 32387 AAAGAAGTCGGCGATCAGTGGCGGACACCAGACCTGCTTTTTTGGGGCATTAATGCGATG 32446 || ||| | || |||||||||| |||| || || | || || |||||| | || Sbjct 32884 AATGAAATTGGGGATCAGTGGCAATCACCTGAAAACCTCGTATGTGGTATTAATTCAATC 32825 Query 32447 TTCGGTCCCCTAACGCTGGATCTCTTTGCTGACGACGATAAC-GCTAAGTGCCCTGTGTG 32505 | || || | || || || || || |||| | ||| || || ||| ||| | | Sbjct 32824 TATGGCCCATTCACCCTAGACCTGTTCACTGATGGCGAAAATAGCAAAGCACCCCATTTC 32765 Query 32506 GTACACCGCCGATGATAACGCGTTGGTACAAGATTGGGCGGAAATGCTGGAATCAATCGG 32565 ||||| || || ||||||||| | ||||||||| | | | | | || ||| || Sbjct 32764 -TACACTGCTGAAGATAACGCGCTAACTCAAGATTGGTCAGCGAAGTTAAAAGAAATTGG 32706 Query 32566 CGGTGCCGCATTCGGTAATCCACCCTATAGCCGCTCTCAGTACCACGAGAAGCAGGCGAT 32625 ||||| || || ||||| || || || ||| | || || || || ||||| || Sbjct 32705 CGGTGTTGCTTTTGGTAACCCTCCGTACTCACGCAGTTCATATCATGAAAAACAGGCAAT 32646 Query 32626 CACCGGCATGACCCACATCATGGATCACACAATGGAGATGCGTGAAAAGGGCGGTCGCTA 32685 ||| ||| | ||||| ||| ||| | | ||||| ||| || ||||| || Sbjct 32645 CACTGGCGTTCGTCACATTATGTCTCATGCTTCAGCAATGCGGGAACTAGGTGGTCGATA 32586 Query 32686 TGTGTTCCTCGTTAAAGCGGCAACAAGTGAAACGTGGTGGCCGGAAGACGCCGATCACAT 32745 ||| ||| | | ||||| ||||| ||||| ||||||||| ||| | || |||||||| Sbjct 32585 TGTATTCTTATTGAAAGCAGCAACCAGTGAGGTGTGGTGGCCAGAAAATGCAGATCACAT 32526 Query 32746 CATGTTTATCCGCGGTCGTATTGGCTTCGATCTCCCCGTGTGGTTTGTCCCTGCCGACGA 32805 | ||||||||||| || ||||| || || | || ||||||| |||| || || || Sbjct 32525 CTGTTTTATCCGCGGGCGCATTGGTTTTGACGTTCCGAAGTGGTTTATCCCCGCAGATGA 32466 Query 32806 TAAGCAGAAGACCACTGGTGCATTCTTTGCTGGCGCCATTGCAATCTTCGATAA 32859 || || || | ||||| |||||||||||||| || || | | |||||||| Sbjct 32465 AAAACAAAAACCAACTGGGGCATTCTTTGCTGGGGCAATCGTTGTTTTCGATAA 32412 >seq2664 Length=5510 Score = 86.0 bits (94), Expect = 2e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 31025 ATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAATCCATTGCGAAAA 31084 ||||| ||| ||||||| || || ||| || | || || ||| | || ||||| Sbjct 3175 ATGAGTATGAGTCTGATGGCGAAGGCAATGGGTATCAGGGTAGGCAATTCCCTGAGAAAA 3116 Query 31085 CTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTGGCCCAGCTAC 31144 ||||| |||||||| | || |||||||| | ||| | || ||||||||||| ||| Sbjct 3115 CTGGTGCTGATCAAATTAGCGGATAATGCGAACGACAAAGGGGAGTGCTGGCCTTCATAC 3056 Query 31145 CAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGTGATGAATCATATTGCGGCC 31204 | ||| |||||||| || ||||| || ||| || | |||| | ||| ||| ||| Sbjct 3055 CGGCACATTGCTGATCATTGCGAATGCAGTAAAAGTGCGGTGAGAAGTCACATTCATGCC 2996 Query 31205 CT 31206 || Sbjct 2995 CT 2994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128350834639648