Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_004348.1 Length=40679 Score E Sequences producing significant alignments: (Bits) Value seq2599 190 5e-44 seq2629 123 6e-24 seq2774 120 8e-23 >seq2599 Length=15424 Score = 190 bits (210), Expect = 5e-44 Identities = 368/533 (69%), Gaps = 10/533 (2%) Strand=Plus/Plus Query 20491 CAGCATGACTGGCTTAATGGGTGGCTTGAGCTATGGGGGGCATGGGTTTATTCGGGTCGT 20550 ||||| |||||| || || ||| | | | ||||||||||||||| | || | Sbjct 11627 CAGCAGGACTGGATTGATAACTGGTTAAATTTGTGGGGGGCATGGGTTCACAGTGGCAGA 11686 Query 20551 CTGGAAAAGCGCATGAGCAGCGTAATAGCGAAGTTCATGGAGAGCGTAGAGCCGGG-AAG 20609 | || |||||| || | | | || ||||||||| || || ||||| | ||| Sbjct 11687 ATCGATAAGCGCCAGATAAACATGATTTATAAGTTCATGATGACTGTTGAGCCTCGCAAG 11746 Query 20610 AGTTATGACAAGACCAATGTGCAATGATGATGATGGAATGTTGATTTCTCAGGTCGTCGA 20669 | | ||| | || ||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 11747 GGGCAAGACC-GCCCTGTGTGCAATGATGATGATGGTATGTTGATTTCTCAGGTGGTCGA 11805 Query 20670 TTCCGTCATGTACATTGACAAGAAAGCCTTTGGCATCCTCCTCAGCTACTACGCTCATGG 20729 | |||| |||| ||||||| | ||||||| ||| || | ||||||||||||||||| || Sbjct 11806 TGCCGTTATGTGCATTGACCAAAAAGCCTATGGGATTTTACTCAGCTACTACGCTCACGG 11865 Query 20730 TTCATCCAAGCGAGCAATTGCATCCTACTATCACGCGACTGCAAAGCCACGCAAGATG-T 20788 |||| |||| ||||| || | || |||||| || ||| || || |||| ||| | Sbjct 11866 CGCATCGAAGCTGTCAATTTCAACTTATTATCACAAGATTGCGAAACCCCGCAGAATGAT 11925 Query 20789 GTGGACGGGGTGGCGATGGATGGAGAAAACCTTCACTGGCAACCTGTAGAAATGAAATTG 20848 | | || ||||| | | || || ||||| | | || ||| | |||| | | Sbjct 11926 GACG-CGCTCTGGCGGGCGCTTAAGGAAGCCTTCTCGTGGGACATGTCGCCGTGAAGTGG 11984 Query 20849 ACGACATCCTGAAAGCGTCATTATTT--GTTTTATACCAGCCAATGCAAAATGCTTTCAA 20906 | || || ||| ||| || | ||| | ||||| ||||| |||||||||| || || Sbjct 11985 ATGAAATTCTGGCAGC--CAGTGTTTACCTATTATATCAGCCTCTGCAAAATGCATTTAA 12042 Query 20907 AATGCGTAAACGTGTTGAGAAAGTTAAGCATGTTGCTGTTAAAAGTCTTGACATGCAATT 20966 ||||||||||| |||||| | || | |||| | || || |||||| ||| Sbjct 12043 TTCACGTAAACGTGTAGAGAAAATCAAAAAGATTGC-CTAGAACGTGTTGACA-CTAATG 12100 Query 20967 ATCCATTTAGCCATAATTAGAGGGTAAGCTGCCGTTAGTGACTCTTAAGTTGC 21019 | | | | ||| |||||| || | | |||||| |||| ||||| || || Sbjct 12101 AGCAAATGAGCAATAATTTTTGGTAAGGTTGCCGTCAGTGTTTCTTAGGTGGC 12153 Score = 95.1 bits (104), Expect = 3e-15 Identities = 217/324 (67%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 19706 ATGAAAACATACCGAATAAAATTGCCGTGGCCTCCTTCAAACAACCGATATTGGCGACAC 19765 ||||| || ||||| ||||| |||||||||| || ||| || | |||||| |||| Sbjct 11039 ATGAAGACTTACCGCTTAAAACTGCCGTGGCCGCCGACAATTAATCATTATTGGAAACAC 11098 Query 19766 TCAAGAGGGGTCCACTACATCAGCGATTGGGGAAAGCGATACCGGCGAGAAG-TAATCGA 19824 ||||| ||| |||||||||| || ||| || ||||| | |||| | ||| Sbjct 11099 TCAAGGTGGGGTCACTACATCACAGAGAAGGGCAAAGATTACCGAC-AGAACATCATCAC 11157 Query 19825 AATAATTCAGCAACAACAGCTAGACCTTAAAATCACACCCCGCATCAGAATCACCATTCT 19884 | | || |||| || | ||||| | | | | ||||||||||||| || || Sbjct 11158 ACTCATCAAGCAGCAGGACTTAGACATCCTCACCCCCTCCCGCATCAGAATAACAATCAC 11217 Query 19885 CGCAGCACCTCCCGATAACCGCAAACGCGACCTGGACAATCTACCAAAAGCCGTTTTTGA 19944 ||| ||||| || ||| | | || | || || || || ||||| || || || Sbjct 11218 TGCACACCCTCCAGACCGACGCCGAAGAGATATCGATAACCTGCCCAAAGCGGTCTTCGA 11277 Query 19945 CGCACTCACTAGTGCGGGCTTCTGGCTGGATGACGGCCAGATAGACGATATGCGCATCAA 20004 | |||| || ||| |||||| | ||||| | ||||| || |||||||| |||| Sbjct 11278 CTCACTGACACATGCCCATTTCTGGGTTGATGATGAGCAGATTGATGATATGCGGATCAC 11337 Query 20005 GCGCTGTCAGGCGATTAAAGGCGG 20028 ||| | | |||||||||||| Sbjct 11338 GCGGGGCGAATTGATTAAAGGCGG 11361 >seq2629 Length=15125 Score = 123 bits (136), Expect = 6e-24 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16355 GTCGATTACCTGACACTAATGACCGCTGAAAAGGCCGATCGCAACGACCTTGCCTACGGC 16414 || ||||| | || || |||| |||| || || || |||||||| |||||||||| Sbjct 4145 GTGGATTATTTAACGCTGATGAAAGCTGGCAAAGCAGACCGCAACGATATTGCCTACGGT 4086 Query 16415 ATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGAT--TGCGTTGTTGTGCTTC 16472 ||||||||||| || ||| | || || |||||||||||| | || || | | | | Sbjct 4085 GAAATCACCAAAGGCCTCAAGCAGCTAGCAAAAGAGCTTGATACTACGGTGGTAT--TAC 4028 Query 16473 TGACGCAGCTTAACCGCGCACTGGAAAACCGAACCAATAAACGCCCATTACCAAGTGACT 16532 | || ||||| |||||| ||| ||| | ||||||| || || || | ||||| || Sbjct 4027 TAACACAGCTAAACCGCAAACTTGAAGATAGAACCAACAAGCGACCTATGCCAAGCGATA 3968 Query 16533 CACGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTTGGGAT 16581 || ||||| || || || || |||||||||||||| ||| | ||||| Sbjct 3967 GCCGTGATACGGGTCAAATCGAGCAGGATTGCGATTACTGGATGGGGAT 3919 >seq2774 Length=20939 Score = 120 bits (132), Expect = 8e-23 Identities = 72/76 (95%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 21039 GGGTCAGTCGTATAAAGGTCATTACGGAAGGCTGTTAACCTTCTTATCGTGGTTCGAGTC 21098 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 20146 GGGTTAGTCGTATAAAGGTTATTACGGAAGGCTGTTAACCTTCTTATCGTGGTTCGATTC 20087 Query 21099 CACGCTGTCCCGCCAA 21114 |||||| ||||||||| Sbjct 20086 CACGCTATCCCGCCAA 20071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130046776958688