Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2162 91.5 1e-13 seq2252 86.0 5e-12 >seq2162 Length=74254 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| || || || |||||||| || || | | | | | ||||| || || Sbjct 49301 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGC 49242 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279 |||||||| | |||| || || |||||| ||||||||||| ||||| || || Sbjct 49241 TTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCTTGGATCTTA 49182 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || || |||| ||||| || | || || || | || || ||||| ||||| Sbjct 49181 GCT-TTCACGTTTTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATCGTTTTGCCTGT 49123 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || ||||| || ||||| Sbjct 49122 CAGAGTCTTGACAAAGATCTGCAT 49099 >seq2252 Length=1130325 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || || || || |||||||| ||| | | | | | ||||| || || Sbjct 563182 ATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAACTG 563241 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | ||||| || || ||||| |||||||||||||| || || || Sbjct 563242 CTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCTTGGATCTT 563301 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || |||| || ||||| || || || | ||| ||||| || || || Sbjct 563302 GGCCTTCACGTTTTCGATAGTATCAGATCCCTCGACCTCCAGGGTGATGGTCTTTCCGGT 563361 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || ||| || || || ||||||||| Sbjct 563362 CAAAGTCTTCACGAAGATTTGCATA 563386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362166558135024