Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq2629 149 2e-31 seq2270 141 3e-29 seq2766 102 3e-17 >seq2629 Length=15125 Score = 149 bits (164), Expect = 2e-31 Identities = 243/354 (69%), Gaps = 6/354 (2%) Strand=Plus/Minus Query 17603 GGAGGCTGCTTAAT--GGCTAAACCAGCGCGAAGGAAATGCAAAATCTGTAAGGAATGGT 17660 |||||||| | ||| |||||| ||| |||| || |||||||| |||| || |||| Sbjct 352 GGAGGCTGTTAAATATGGCTAACCCAAGGCGACGGCGCTGCAAAATATGTAGAGAGTGGT 293 Query 17661 TTCACCCGGCATTCTCAAATCAGTGGTGGTGCTGCCCGGAACACGGAACTCAATTAGCAC 17720 |||| || | | |||| |||||| |||| || |||||| | |||||||| Sbjct 292 TTCATCCCAAGTACGAAAATATAGAGTGGTGTAGCCCAGAGCACGGAGCAGAATTAGCAA 233 Query 17721 TCGAACGACGAAGTAAAGAACGCGAAAAAGCGGAAAAAGCANNNNNNNNNNNNNNNNNNN 17780 || | ||||||||||| || | |||||| ||| || Sbjct 232 TCAAGCGACGAAGTAAGGAGAGAGAAAAACTAGAAGC--CAAACTCAAGAAAGAACAGAA 175 Query 17781 NNGAGGAGCAGAAACAGAAAG--ATAAACTGAAGATTCGAAAACTCGCCTTAAAGCCCCG 17838 | || || || || | ||||||| || || || | || |||| ||||| Sbjct 174 GCAAAAAGAAGTAAAAGCCCGCGATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCG 115 Query 17839 CAGTTACTGGATTAAACAAGCCCAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCG 17898 |||||| |||||||||||||| ||||||||||| ||||| | ||||||||||||||||| Sbjct 114 CAGTTATTGGATTAAACAAGCACAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCG 55 Query 17899 CGACTTACCATGTATCTCGTGCGGAACGCTCACGTCTGCTCAGTGGGATGCCGG 17952 || || ||||| || || ||||||||| | ||||||||||||||||| || Sbjct 54 TGATTTGCCATGCATATCATGCGGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 >seq2270 Length=26257 Score = 141 bits (156), Expect = 3e-29 Identities = 295/439 (67%), Gaps = 14/439 (3%) Strand=Plus/Minus Query 44414 AAACCGGCATACAGCAATAACCCGGCCTGGTGCCTGTGGGACATGCTGACCCACCCGCGC 44473 |||||||| |||| |||||||||||| ||| | | || || ||||||| | || Sbjct 5162 AAACCGGCCTACACCAATAACCCGGCGTGGATATTCTACGATTTGGTGACCCATACCCGT 5103 Query 44474 TACGGAATGGGAAAACGTCTGGGGGCGGC-GGATGTGGACAAGTGGGCGCTGTATGCCAT 44532 || || || || || | ||||||| || |||| |||||| || ||||||||||| Sbjct 5102 TATGGCATCGGCAAGCTGATGGGGGCATTTGGCTGTG-ACAAGTTCGCCCTGTATGCCAT 5044 Query 44533 CGGGCAGTACTGCGACCAGACGGTCCCGGATGGTTTCGGGGGCACAGAGCCGCGGATGAC 44592 | ||| || || |||||| || |||||||| || || ||||| || || || | || Sbjct 5043 TGCGCAATATTGTGACCAGCTCGTGCCGGATGGATTTGGTGGCACCGAACCCCGCTTTAC 4984 Query 44593 CTTTAATGCGTACCTGTCACAACAGCGTAAGGCGTGGGACGTTCTCAGTGATTTCTGCTC 44652 || ||||||||| | | | || |||||||| |||| || || |||||| ||| Sbjct 4983 CTGCAATGCGTACATCGCCAATCAACGTAAGGCACGGGATGTGCTGGATGATTTGGCCTC 4924 Query 44653 GGCGATGCGCTGTATGCCGGTATGGAACGGGCAGACGCTGACGTTTGTGCAGGACCGTCC 44712 || | | || |||||| ||| |||||||||| | ||||| | | |||||||| || Sbjct 4923 GGTGTTTCGGGGTATGCAGGTCTGGAACGGGCTGCAACTGACCTGCTTTCAGGACCGGCC 4864 Query 44713 GTCAGATGTGGTGTGGCCCTACACAAACAGTGATGTGGTGGCTGACAATGAAGGTGTGGG 44772 | ||| ||| ||| | | ||| || ||||||| | | ||| Sbjct 4863 TGCCGATCCGGTCTGGACATTCACCAATGCCAATGTGGTCGAGGGCAA------------ 4816 Query 44773 ATTCCGCTACAGTTTCAGCGCCCTGAAGGACCGTCATACTGCGGTGGAGGTCAGTTACGT 44832 ||| ||||||| | |||| ||| | ||| ||||| | | | || || | | || Sbjct 4815 ATTTAACTACAGTGCCGCCGCCAAGAAAGCCCGGCATACGGTGATTGAAGTGACGTGGGT 4756 Query 44833 CGACCCGCATAACGGCTGG 44851 | ||||| | ||||||||| Sbjct 4755 CAACCCGGACAACGGCTGG 4737 Score = 95.1 bits (104), Expect = 4e-15 Identities = 195/287 (68%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 42237 GAGATTGTGGCACTGGTCCACAGTCATCCCGGTGGACTGCCCTGGCTGAGCGAGGCTGAC 42296 ||||||| ||| | || ||||| ||||| || | ||| ||||| | | ||| Sbjct 7023 GAGATTGAGGCCATTGTGCACAGCCATCCTAACGGTCAACCCCATCTGAGTGCCGAAGAC 6964 Query 42297 CGGCGGCTGCAGATAAAAAGCGCACTGCCCTGGTGGCTGGTCTGCCGGGGTGACATTCAC 42356 || || | ||||||||||| | ||||| |||||| ||||||| | | | | || Sbjct 6963 CGCCGACAGCAGATAAAAACCAGGCTGCCGTGGTGGTTGGTCTGTGGTGATCGGGTGCAT 6904 Query 42357 AAATTCCGCTGTGTGCCACATCTGACAGGACGGCGC---TTTGAGCACGGGGTGACGGAC 42413 ||||||| ||||| | | | | || ||||| ||| |||||| | ||| Sbjct 6903 CAATTCCGACCGGTGCCGCGTTT-ATTGG--GGCGCGAATTTATCCACGGGTTACAGGAT 6847 Query 42414 TGTTACACGCTGTTCCGGGATGCATACCATCTGGCGGGAATTGATATGCCGGATTTTGAG 42473 || ||| ||||| |||||||||| |||||||||||||| ||||| | ||| || Sbjct 6846 TGCTACTCGCTGATCCGGGATGCCTACCATCTGGCGGGGATTGAGTTAGACGATATTCCC 6787 Query 42474 CGTGAGGATGACTGGTGGCGCAACGGTCAGAACCTTTACCTGGACAA 42520 ||||| || | |||||| || || |||||||| || || || || Sbjct 6786 CGTGATGAAGCATGGTGGAACACGGGGCAGAACCTGTATCTCGATAA 6740 Score = 89.7 bits (98), Expect = 2e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 41484 AGCCGGTGACCTGGCAGGGGCGGCAATATCAGGCGTACCCGATTGAGGGCAGTGGCTTTG 41543 ||||||||| ||||||||| || ||| ||||||||||| |||||| || || |||| Sbjct 7758 AGCCGGTGATTTGGCAGGGGGTGCGCTATGAGGCGTACCCGGTTGAGGTGAGCGGGTTTG 7699 Query 41544 AGATGAACGGAAAGGGCAGCAGTGCCCGCCCG 41575 |||||||||| || ||| ||||||||| ||| Sbjct 7698 AGATGAACGGGAAAGGCCCCAGTGCCCGTCCG 7667 >seq2766 Length=35022 Score = 102 bits (112), Expect = 3e-17 Identities = 245/361 (68%), Gaps = 11/361 (3%) Strand=Plus/Minus Query 42424 TGTTCCGGGATGCATACCATCTGGCGGGAATTGATA--TGCCGGATTTTGAGCGTGAGGA 42481 ||||||| || ||||||||||| || || ||| | | || |||||||||||||| || Sbjct 8252 TGTTCCGTGACGCATACCATCTTGCAGG--TTGCTCACTACCAGATTTTGAGCGTGAAGA 8195 Query 42482 TGACTGGTGGCG-CAACGGTCAGAACCTTTACCTGGACAATATGGCGGTCACCGGCTTTT 42540 | |||||||| ||| || ||| | | || |||| || | |||| | ||||||| Sbjct 8194 CAATTGGTGGCGGCAAGGGAAAGAGC-TCTATTTGGATAACTTAGCGGAAAACGGCTTTA 8136 Query 42541 ACCGGGTGCCCCTGTCCTCTGCACAGGCGGGCGATATCCTGCTGTGCTGCTTTGGCGCAT 42600 | | || | | | | || | | || ||||| | |||| |||| || | | Sbjct 8135 AGCAAGT-CAAAAGAGATATCCA--GCCTGGTGATATTATTTTGTGTTGCTATGCCAGTT 8079 Query 42601 CGGTGGCCAATCATGCCGCCATATACTGCGGC-AACGGTGAACTGCTTCACCATCTGCCT 42659 | || ||||| ||||| || |||| || ||| | | | | || ||| | || Sbjct 8078 CTCGTGCAAATCACGCCGCAATCTACTTAGGGGAACAGACCATTT-TACATCATGTCCCG 8020 Query 42660 GAACAACTGAGTAAACGGGAGAGGTATTCCGAAAAATGGCAACGACGAACGCATTCTGTC 42719 | |||||||| || || ||| ||| ||||| |||||||||| || || || | Sbjct 8019 AATCAACTGAGCAAGCGAGAGGTTTATAACGAAAGATGGCAACGAATGACTCACTCGATT 7960 Query 42720 TGGCGTCACCGCCACTGGCACGCATCTGCCTTCACGGGGATTTACAACGATTTGGCCGCC 42779 |||||| |||| ||||||| |||| | || | |||||||| |||||||||||||| | Sbjct 7959 TGGCGTTACCGAAACTGGCAACCATCCGATTTTATGGGGATTTGCAACGATTTGGCCGTC 7900 Query 42780 G 42780 | Sbjct 7899 G 7899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185248099497856