Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_004827.1 Length=43033 Score E Sequences producing significant alignments: (Bits) Value seq2629 143 7e-30 >seq2629 Length=15125 Score = 143 bits (158), Expect = 7e-30 Identities = 228/326 (70%), Gaps = 6/326 (2%) Strand=Plus/Minus Query 13434 GGAGATATTGGATTTATTGGTATTGACTACTTAACGCTGATGAAAGCCGAAAAAGCCGAG 13493 ||| | ||||| ||||| || | || || ||||||||||||||||| | ||||| || Sbjct 4166 GGAAAAATTGGGTTTATCGGCGTGGATTATTTAACGCTGATGAAAGCTGGCAAAGCAGAC 4107 Query 13494 CGTAACGACTTAGCTTACGGGCAAGTTACCAAAGAATTAAAAAATCTTGCGCGTGAAATG 13553 || ||||| | || ||||| || | ||||||| | || | || || || | Sbjct 4106 CGCAACGATATTGCCTACGGTGAAATCACCAAAGGCCTCAAGCAGCTAGCAAAAGAGCTT 4047 Query 13554 GATTGT---GTGGTTTTGCTTTTAACTCAACTGAATCGTGGGCTTGAAAGTCGCTCAGAT 13610 ||| | ||||| || || ||| || || || || |||||| | | | | Sbjct 4046 GATACTACGGTGGTATTACT---AACACAGCTAAACCGCAAACTTGAAGATAGAACCAAC 3990 Query 13611 AAACGACCAATGCCAAGTGACAGCCGTGATACAGGACAAATTGAACAAGAGTGTGATTAC 13670 || ||||| |||||||| || ||||||||||| || ||||| || || || || |||||| Sbjct 3989 AAGCGACCTATGCCAAGCGATAGCCGTGATACGGGTCAAATCGAGCAGGATTGCGATTAC 3930 Query 13671 TGGTTGGGACTTTATAAAGAATCCGTTTACAACGAAAACGCCGACCCAAGTTTGACAGAA 13730 ||| |||| | || ||||| || |||||||||||||| |||||| | | ||||| Sbjct 3929 TGGATGGGGATATACAAAGACTCAGTTTACAACGAAAAAGCCGACAAGACGCTTACAGAG 3870 Query 13731 ATTATCGTGCGATTAAATCGCCATGG 13756 |||| || || | |||||||| || Sbjct 3869 CTTATTGTAAGACTTAATCGCCACGG 3844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137579320768160