Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_004913.3 Length=59866 Score E Sequences producing significant alignments: (Bits) Value seq2629 140 1e-28 >seq2629 Length=15125 Score = 140 bits (154), Expect = 1e-28 Identities = 122/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 49775 GATAAACTGAAGATTCGAAAACTCGCCTTAAAGCCCCGCAGTTACTGGATTAAACAAGCC 49834 |||||||| || || || | || |||| ||||||||||| |||||||||||||| Sbjct 152 GATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTTATTGGATTAAACAAGCA 93 Query 49835 CAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCGCGACTTACCATGTATCTCGTGC 49894 ||||||||||| ||||| | ||||||||||||||||| || || ||||| || || ||| Sbjct 92 CAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATTTGCCATGCATATCATGC 33 Query 49895 GGAACGCTCATGTCTGCTCAGTGGGATGCCGG 49926 |||||| | ||||||||||||||||| || Sbjct 32 GGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 Score = 120 bits (132), Expect = 1e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 46285 GTCGATTACCTGACACTAATGACCGCTGAGAAGGCCGATCGCAACGACCTTGCTTACGGC 46344 || ||||| | || || |||| |||| || || || |||||||| |||| ||||| Sbjct 4145 GTGGATTATTTAACGCTGATGAAAGCTGGCAAAGCAGACCGCAACGATATTGCCTACGGT 4086 Query 46345 ATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGAT--TGCGTTGTTGTGCTTC 46402 ||||||||||| || ||| | || || |||||||||||| | || || | | | | Sbjct 4085 GAAATCACCAAAGGCCTCAAGCAGCTAGCAAAAGAGCTTGATACTACGGTGGTAT--TAC 4028 Query 46403 TGACGCAGCTTAACCGCGCACTGGAAAGCCGAACCAATAAACGCCCACTACCAAGTGACT 46462 | || ||||| |||||| ||| ||| ||||||| || || || | ||||| || Sbjct 4027 TAACACAGCTAAACCGCAAACTTGAAGATAGAACCAACAAGCGACCTATGCCAAGCGATA 3968 Query 46463 CACGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTGGGGAT 46511 || ||||| || || || || |||||||||||||| ||| ||||||| Sbjct 3967 GCCGTGATACGGGTCAAATCGAGCAGGATTGCGATTACTGGATGGGGAT 3919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191443088799104