Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_004914.3 Length=62706 Score E Sequences producing significant alignments: (Bits) Value seq2629 149 3e-31 >seq2629 Length=15125 Score = 149 bits (164), Expect = 3e-31 Identities = 243/354 (69%), Gaps = 6/354 (2%) Strand=Plus/Minus Query 50822 GGAGGCTGCTTAAT--GGCTAAACCAGCGCGAAGGAAATGCAAAATATGCAAGGAATGGT 50879 |||||||| | ||| |||||| ||| |||| || ||||||||||| | || |||| Sbjct 352 GGAGGCTGTTAAATATGGCTAACCCAAGGCGACGGCGCTGCAAAATATGTAGAGAGTGGT 293 Query 50880 TTCACCCGGCATTCTCAAATCAGTGGTGGTGCTGCCCGGAACACGGAACTCAATTAGCAC 50939 |||| || | | |||| |||||| |||| || |||||| | |||||||| Sbjct 292 TTCATCCCAAGTACGAAAATATAGAGTGGTGTAGCCCAGAGCACGGAGCAGAATTAGCAA 233 Query 50940 TCGAACGACGAAGTAAAGAACGCGAAAAAGCGGAAAAAGCANNNNNNNNNNNNNNNNNNN 50999 || | ||||||||||| || | |||||| ||| || Sbjct 232 TCAAGCGACGAAGTAAGGAGAGAGAAAAACTAGAAGC--CAAACTCAAGAAAGAACAGAA 175 Query 51000 NNGAGGAGCAGAAACAGAAAG--ATAAACTGAAGATTCGAAAACTCGCCTTAAAGCCCCG 51057 | || || || || | ||||||| || || || | || |||| ||||| Sbjct 174 GCAAAAAGAAGTAAAAGCCCGCGATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCG 115 Query 51058 CAGTTACTGGATTAAACAAGCCCAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCG 51117 |||||| |||||||||||||| ||||||||||| ||||| | ||||||||||||||||| Sbjct 114 CAGTTATTGGATTAAACAAGCACAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCG 55 Query 51118 CGACTTACCATGTATCTCGTGCGGAACGCTCACGTCTGCTCAGTGGGATGCCGG 51171 || || ||||| || || ||||||||| | ||||||||||||||||| || Sbjct 54 TGATTTGCCATGCATATCATGCGGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 Score = 120 bits (132), Expect = 1e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 46284 GTCGATTACCTGACACTAATGACCGCTGAGAAGGCCGATCGCAACGACCTTGCTTACGGC 46343 || ||||| | || || |||| |||| || || || |||||||| |||| ||||| Sbjct 4145 GTGGATTATTTAACGCTGATGAAAGCTGGCAAAGCAGACCGCAACGATATTGCCTACGGT 4086 Query 46344 ATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGAT--TGCGTTGTTGTGCTTC 46401 ||||||||||| || ||| | || || |||||||||||| | || || | | | | Sbjct 4085 GAAATCACCAAAGGCCTCAAGCAGCTAGCAAAAGAGCTTGATACTACGGTGGTAT--TAC 4028 Query 46402 TGACGCAGCTTAACCGCGCACTGGAAAGCCGAACCAATAAACGCCCACTACCAAGTGACT 46461 | || ||||| |||||| ||| ||| ||||||| || || || | ||||| || Sbjct 4027 TAACACAGCTAAACCGCAAACTTGAAGATAGAACCAACAAGCGACCTATGCCAAGCGATA 3968 Query 46462 CACGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTGGGGAT 46510 || ||||| || || || || |||||||||||||| ||| ||||||| Sbjct 3967 GCCGTGATACGGGTCAAATCGAGCAGGATTGCGATTACTGGATGGGGAT 3919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200527400346768