Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq2595 502 5e-138 seq2606 434 2e-117 seq2689 116 8e-22 seq2573 87.8 4e-13 >seq2595 Length=21780 Score = 502 bits (556), Expect = 5e-138 Identities = 934/1361 (69%), Gaps = 19/1361 (1%) Strand=Plus/Plus Query 10419 ATGCCGATTATCGACCTGAACCAGCTACCCGCACCGGATGTGGTCGAGGAGCTGGACTTT 10478 ||||| | ||||| | | |||| |||| ||||||||||||| ||| ||||| | Sbjct 19045 ATGCCAACAATCGATTTAAGCCAGTTACCACCACCGGATGTGGTTGAGCCACTGGATTAC 19104 Query 10479 GAAACCATTCTCGCCGAACGCAAGGCGACA-CTGATTTCCCTTTACCCGGAAGACCAGCA 10537 ||| | | | || || || ||| |||||||| ||||| |||| ||| ||||| Sbjct 19105 GAACAACTGTTAGAAGAGCGTAAA-CGAGGTCTGATTTCGCTTTATCCGGCAGATCAGCA 19163 Query 10538 GGAGGCGGTCGCCCGTACCCTGACGCTGGAATCCGAGCCTCTCGTCAAACTGCTGGAGGA 10597 ||| || || ||||| || || |||||||| || ||| | || || ||||||| || Sbjct 19164 GGATGCTGTTGCCCGAACATTGCAACTGGAATCAGAACCTTTGGTGAAGTTGCTGGAAGA 19223 Query 10598 AAATGCTTATCGTGA---GCTTATCTGGCGTCAGCGTGTGAATGAGGCTGCACGGGCGGT 10654 ||||| || || || |||| | ||| ||||| || ||||| || || || ||||| Sbjct 19224 AAATGTGTACCGCGAATTGCTTCT---GCGCCAGCGCGTTAATGAAGCAGCCCGTGCGGT 19280 Query 10655 GATGCTGGCCTGTGCCGCCGGTAATGACCTTGATGTGATTGGTGCCAATTACAACACCAC 10714 ||| |||||| | | |||||| ||| || ||| | | || | ||| ||||| | Sbjct 19281 TATGGTGGCCTATTCAACCGGTAGTGATCTGGATCAGCTGGGCTCGAATAACAACGTATC 19340 Query 10715 ACGCCTGATTATCACCCCGGCAGATGATTCGACCATCCCGCCGACACCGGCCGTGATGGA 10774 ||| || || | | || ||| |||||||| | ||||| || || ||||| ||||| Sbjct 19341 GCGCATGGTTTTGCGTTCTGCGGATAATTCGACCGTACCGCCAACTCCTGCCGTTATGGA 19400 Query 10775 ATCTGACACCGATTATCGTCTGCGTATTCAGCAGGCGTTTGAAGGCTTAAGCGTCGCCGG 10834 ||| |||| ||||| |||| | ||||||| ||||| |||||||| || ||||| || || Sbjct 19401 ATCCGACAACGATTTTCGTGTCCGTATTCCACAGGCATTTGAAGGTTTGAGCGTTGCAGG 19460 Query 10835 GTCAGTGGGAGCCTATCAGTATCATGGTCGCAGTGCTGACGGGCGTGTCGCCGATATTTC 10894 | ||||| || ||| | ||||||| || ||||| || || || || || ||| || Sbjct 19461 CCCGGTGGGTGCTTATGAATATCATGCCCGTAGTGCGGATGGCCGCGTTGCAGATGCATC 19520 Query 10895 TGTCACCAGTCCGTCTCCTGCCTGTGTCACCATCTCTGTGCTGTCACGTGAAAATAACGG 10954 | | ||| ||||| || || ||||| | || | |||| |||| | | || || Sbjct 19521 GGCAATCAGCCCGTCACCGGCTAACGTCACAGTAACTATTATGTCCCGTGCAGACAAAGG 19580 Query 10955 CGTCGCATCCGAAGACCTGCTGGCTGTGGTGCGTAACGCCCTTAATGGTGAGGACGTCAG 11014 || |||||| |||| ||||||| | || || ||||| |||| || |||| | Sbjct 19581 AGTGGCATCCAAAGAGCTGCTGGAAATTGTCGAAAAAGCCCTGAATGACGAAAACGTGCG 19640 Query 11015 GCCGGTGGCCGACCGCGTGACCGTGCAGTCTGCCGCCATCGTTGAATATCAGATAAACGC 11074 |||||||| || || ||| || ||||| || ||| || |||||| | || | || Sbjct 19641 TCCGGTGGCTGATCGTCTGAAAGTCCAGTCAGCGAGCATTGTGGAATATGAAATTGATGC 19700 Query 11075 CACGCTTTACCTTTACCCTGGTCCCGAAAGCGAACCCATTCGCGCTGCCGCTGTGAAAAA 11134 ||| ||| | | ||| || ||| ||| || || ||| || || | | | || Sbjct 19701 GGTGCTGTACATCTTCCCGACGCCGGAATCCGAGCCTATCCGCAAGGCAGCAGAGCAGAA 19760 Query 11135 GCTGGAAGCGTATATCACGGCACAGCACCGGCTGGGGCGCGACATCCGTCTGTCTGCCAT 11194 ||| || ||| | || ||||| || |||| || || || ||| |||| || || Sbjct 19761 ACTGAAACACTATGTTGAAGCGCAGCATCGTTTGGGACGTGATATTCGTTTGTCAGCTAT 19820 Query 11195 TTATGCCGCTTTGCATGTGGAAGGCGTGCAGCGTGTCGAGCTGGCCGCACCACTGGCCGA 11254 ||| ||||| ||||||||||||| || |||||||| |||||| |||||| || || Sbjct 19821 TTACGCCGCACTGCATGTGGAAGGTGTCCAGCGTGTGGAGCTGAAAGCACCATTGAAAGA 19880 Query 11255 CATTGTGCTCAACAGTACGCAGGCGTCTTTCTGTACTGAATACCGCGTCGTGAC---CGG 11311 | |||| | | | || ||||| |||| || || || ||| | |||| || Sbjct 19881 CGTTGTATTGGATAAAACACAGGCTTCTTATTGCAC-CAAAACCAC--ACTGACAATGGG 19937 Query 11312 AGGCTCGGATGAGTGATTCGCGACTGCTGCCGACCGGCTCATCACCGCTTGAAGTTGCCG 11371 ||| || ||||| |||| || || ||||||| || ||| | ||| | ||| | || | Sbjct 19938 AGGTTCTGATGAATGAT---CGCCTTCTGCCGATGGGTTCAACGCCGTTAGAACTGGCTG 19994 Query 11372 CCGCAAAAGCCTGTGCGGAAATTGAAAAAACGCCGGTCAGGATTCGTGAACTGTGGAACC 11431 | || ||||||||||| || | | || | || | || || |||||||| | Sbjct 19995 CGGCGAAAGCCTGTGCCGAGTTGCAGAAGATCAAAATCCCATTGCGGGAGCTGTGGAATC 20054 Query 11432 CGGACACCTGCCCGGCAAATCTGCTGCCGTGGCTGGCGTGGGCGTTTTCGGTCGACAGGT 11491 |||||||||| |||||| | ||||| | ||||| ||||||| || || ||| | | Sbjct 20055 CGGACACCTGTCCGGCATCGTTACTGCCTTATCTGGCATGGGCGTGGTCTGTGGACCGCT 20114 Query 11492 GGGATGAAAAGTGGCCGGA-AGCGACCAAACGTGCCGTTATCCGCGATGCCTATTTCATC 11550 |||| ||||| ||| | || ||| |||||| | | || ||| | | | ||| | Sbjct 20115 GGGACGAAAACTGGTCTGAGAGC-ACCAAAAGGGAAGTGATCAAGGGTTCACTGTTCCTG 20173 Query 11551 CACTGTCATAAAGGCACTATCGGCGCAATCCGGCGTGTGGTGGAGCCGCTCGGCTATCTC 11610 || || ||||| || || || || ||||| || ||| | |||||| | || |||||| Sbjct 20174 CATAAACACAAAGGAACGATTGGAGCCATCCGACGAGTGATTGAGCCGTTGGGTTATCTC 20233 Query 11611 ATTAACGTGACGGAGTGGTGGGAAAACAGTGACCCGCCAGGCACCTTCCGGCTTGATATT 11670 || ||| | ||| |||||| | | || || | |||||||||||||| || |||||| Sbjct 20234 ATCCGCGTAAAGGAATGGTGGCAGACCAACGATGCCCCAGGCACCTTCCGACTGGATATT 20293 Query 11671 GGTGTACTGGAAAGCGGTATCACAGAGGCAATGTATCAGGAAATGGAACGGCTGATTGCT 11730 ||||| ||||| ||||||||||| | | ||||| | ||| ||||| |||||| Sbjct 20294 GGTGTTCTGGACAGCGGTATCACCCATGAAATGTTCGAAGAACTGGAAAACCTGATTTTC 20353 Query 11731 GATGCCAAACCTGCAAGCCGCCACCTTATTGGCCTGAACAT 11771 ||||| ||||| | |||||| || | ||||| || |||| Sbjct 20354 GATGCAAAACCGGTAAGCCGACATTTGATTGGATTGGACAT 20394 >seq2606 Length=3143 Score = 434 bits (480), Expect = 2e-117 Identities = 1152/1739 (66%), Gaps = 72/1739 (4%) Strand=Plus/Plus Query 15842 GACTATCATCACGGCGTGCAGGTGCTGGAGATTAACGAGGGCACCCGCGTCATTTCCACC 15901 || ||||||||||| || | || | ||| |||||||| || || || ||| | ||| Sbjct 221 GATTATCATCACGGAGTCCGTGTACAGGAAATTAACGAAGGTACTCGTACCATCACTACC 280 Query 15902 GTATCCACCGCCATTGTTGGCATGGTCTGCACGGCCAGCGATGCGGATGCGGAAATCTTC 15961 || |||||| || || || ||||| || || || || || || | ||| || Sbjct 281 GTTAGCACCGCTATCGTAGGTATGGTTTGTACTGCTCCTGACGCAGACGAAAAAACATTT 340 Query 15962 CCCCTCAATAAACCGGTACTGATTACCAATGTGCAGAGTGCAATTGCAAAGGCCGGTAAA 16021 || | |||| || || |||||||| | || ||| || | || |||||||| || Sbjct 341 CCATTAAATACTCCAGTCCTGATTACTGACGTTATGAGCGCCAGTGGCAAGGCCGGGGAA 400 Query 16022 AAAGGCACGCTGGCGGCGTCGTTGCAGGCTATCGCCGACCAGTCAAAACCGGTCACCGTT 16081 |||||||| || | | || || | || ||||| | ||| | || || || || Sbjct 401 AAAGGCACTTTGTCTACATCTCTGAAAGCCATCGCTGCTCAGGCTCTGCCTGTGACTGTG 460 Query 16082 GTCGTACGTGTGGAAGACGGCACCGGCGAAGACGAAGAAACGAAACTCGCGCAGACCGTT 16141 || || ||||||||||| |||| || |||||| ||||| | || Sbjct 461 GTTGTTCGTGTGGAAGAAGGCA------AATCTGAAGAA--GAAAC----------CATT 502 Query 16142 TCCAATATCATCGGCACCACTGACGAAAACGGTCAGTACACCGGACTGAAGGCCCTGCTG 16201 || |||||||| | ||| | ||| || | ||||| || |||| ||| || Sbjct 503 AGTAACATCATCGGTGGTGTTACCGATGAAGGTAAGAAAACCGGTATGCAGGCGCTGTTG 562 Query 16202 GCGGCAGAGTCGGTAAC-CGGTGTTAAACCGCGTATTCTCGGCGTGCCGGGACTGGACAC 16260 |||||| | | | | |||||||||||| || ||||| || || || || |||||| | Sbjct 563 GCGGCACAAA-GCCAGCTCGGTGTTAAACCACGCATTCTGGGTGTTCCAGGTCTGGACTC 621 Query 16261 CAAAGAGGTGGCTGTTGCACTGGCATCAGTCTGTCAGAAGCTGCGCGCTTTCGGGTATAT 16320 ||| || |||| || ||| || | | | || | ||| || | | ||| | Sbjct 622 AAAACCAGTTGCTGCTGAACTCGCCGCTATTGCTAAGCAACTGAAAGCAATGGCATATGT 681 Query 16321 CAGCGCATGGGGCTGTAAAACCATTTCCGAGGTGAAAGCCTACCGCCAGAATTTCAGCCA 16380 |||||| | ||||| |||| || || || || | || || | || ||| | || Sbjct 682 CAGCGCTTATGGCTGCAAAAATATCTCTGAAGTTATCAAATATCGTGAAAACTTCGGTCA 741 Query 16381 GCGTGAGCTGATGGTCATCTGGCCGGATTTCCTCGCATGGGATACGGTCGCCAGTACCAC 16440 ||||||| | ||| | || ||||| |||||||| |||| | | | | ||| | Sbjct 742 GCGTGAGGTAATGTTAATTTGGCCTGATTTCCTGAGATGGAACAAAGGTGA-AGTT--AT 798 Query 16441 CGCCACCGCGTATGCCACCGCCCGTGCGCTGGGTCTGCGCGCTAAAATCGACCAGGAGCA 16500 ||| ||| ||| || || ||| ||||| |||| || ||||||||| | || Sbjct 799 CGC-ACC-----TGCGACGGCTTATGCACTGGGCTTGCGTGCCAAAATCGACGAAGAAAC 852 Query 16501 GGGCTGGCATAAAACGCTGTCCAACGTCGGGGTGAACGGTGTTACCGGC--ATCAGCGCG 16558 |||||||| ||||| || ||||| || || || ||||| || || || ||| || Sbjct 853 CGGCTGGCACAAAACCCTATCCAATGTGGGTGTTAACGGCGTAACGGGTCTATCTGCTGA 912 Query 16559 TCCGTATTCTGGGATTTGCAGGAGTCCGGCACCGATGCTGACCTGCTTAACGAG--TCAG 16616 | || ||||||||| |||| | | | || || || ||||| ||||| ||| || ||| Sbjct 913 T--GTCTTCTGGGATCTGCAAGCGACTGGAACTGAGGCTGATCTGCTGAACCAGAATCA- 969 Query 16617 GCGTCACAACGCTGATTCGCCGTGACGGTTTCCGCTTCTGGGGTAACCGTACCTGC---- 16672 | ||||||| ||||| ||| ||||||| || ||||||||| || || ||| Sbjct 970 -CATCACAACACTGATCCGCAAAAACGGTTTTCGTTTCTGGGGTTCACGCACTTGCGCTG 1028 Query 16673 --------TCTGATGATCCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTGC 16724 ||||| || | ||||||| || |||| ||||||||| ||||| ||||| | Sbjct 1029 GCTCTGCTTCTGAGGACTCACTGTTCCCATTCGAAAGCTACACCCGTACCGCTCAGGTAC 1088 Query 16725 TGGCCGACACGATGGCTGAGGCGCACATGTGGGCGGTGGACAAGCCCATCACCGCAACGC 16784 |||| ||||| |||||||| ||||| |||||||| | ||||| || | ||| || ||| Sbjct 1089 TGGCTGACACCATGGCTGACGCGCATATGTGGGCAATCGACAAACCGCTGACCCCATCGC 1148 Query 16785 TGATTCGCGACATCGTTGACGGCATCAATGCCAAATTCCGTGAGCTGAAAACAAACGGCT 16844 || | |||||||| | || ||||||||||| || |||||||| |||||| | ||||| Sbjct 1149 TGGTACGCGACATTATCGAAGGCATCAATGCTAAGTTCCGTGAACTGAAAGCGGGCGGCT 1208 Query 16845 ATATCGTGGATGCGACCTGCTGGTTCAGCGAAGAGTCCAACGATGCGGAAACCCTCAAGG 16904 | ||| | || | ||||||| ||| | ||||||| || ||||| || | Sbjct 1209 ACATCATTGACGGTCGTTGCTGGTATGACGACAAAATCAACGATAAAGACACCCTGAAAG 1268 Query 16905 CCGGAAAACTGTATATCGACTACGACTATACCCCGGTGCCTCCTCTTGAAAATCTGACCC 16964 | || |||||| ||||| |||||||||||||| || || || || ||||| ||| Sbjct 1269 CAGGCAAACTGACCATCGATTACGACTATACCCCTGTACCGCCACTGGAAAACATGATGT 1328 Query 16965 TGCGCCAGCGCATTACCGATAAATACCTGGCAAATCTGGTCACTTCGGTTAACAGCAATT 17024 | |||||||||||||| |||| |||||| || | | || | || || || | Sbjct 1329 TACGCCAGCGCATTACAGATAGTTACCTGATGGATTTCG-CAAAAAG--TATCAATAAAT 1385 Query 17025 AAGGAGCCTGACCGATGGCAATGCCGCGCAAACTCAAGTTAATGAACGTCTTTCTGAACG 17084 |||| | || || ||||||| | || |||||||| || | |||| | || | | Sbjct 1386 AAGG-GGCTAACTGATGGCATTACCTCGCAAACTTAAATATCTGAATTTGTTCAACGATG 1444 Query 17085 GCTACAGCTATCAGGGCGTTG-CAAAGTCCGTCACGCTGCCAAAACTGACCCGTAAGCTC 17143 || ||| |||||||||| ||| | ||| | | || || || || |||| ||| || || Sbjct 1445 GCAACAACTATCAGGGCATTGTCGAAGAGC-TGACTCTTCCTAAGCTGAGCCGCAAACTG 1503 Query 17144 GAAAACTATCGCGGTGCGGGGATGAACGGCAGCGCACCGGTAGACCTCGGCCTTGATGAC 17203 ||| ||| || ||||| || ||||||||||||||| ||| || || || || ||||| Sbjct 1504 GAAGCCTACCGTGGTGCTGGTATGAACGGCAGCGCAATGGTGGATCTGGGTCTGGATGA- 1562 Query 17204 GATGCGCTGTCAATGGAGTGGTCGCTCGGTGGCTTCCCGGATTCAGT--TATCTG--GGA 17259 | |||| | ||| | || ||| ||| | | ||| ||| | ||| | Sbjct 1563 -AGGCGCATTGGATGCGGAATTCACTC--TGG---GCGGTATTGAGTCCCAACTGTACAA 1616 Query 17260 GCTTTACGCCGCAAC---CGGTGTGGATGCTGTGCCGATTCGTTTTGCAGGCTCTTACCA 17316 | | | ||| | | | || |||| ||| | | || ||||||||||||| | Sbjct 1617 ACAGT--GGGGCATCGCTCAG-GTCGATGGTGTCATGCTGCGCTTTGCAGGCTCTTTTGA 1673 Query 17317 GCGTGACGATACCGGCGAAACGGTGGCCGTCGAAGTGGTCATGCGTGGACGTCAGAAAGA 17376 || || || || || || ||| || || ||||| || |||||||| ||| | || Sbjct 1674 ACGCGAAGACACAGGTGATGTGGTTGCAGTTGAAGTTGTTATGCGTGGCCGTTTTCAGGA 1733 Query 17377 AATCGACACCGGCGAGGGCAAACAGGGAGAAGACACCGAGTCGAAAATCTCCGTGGTCTG 17436 | | || ||| || ||||| || |||| | | ||||| ||| | Sbjct 1734 ATTTGATCACGGTACTTATAAGCAGGGTGATAACACTCAAACCAAAATTACCGCGAAAAA 1793 Query 17437 CACCTATTTCCGGCTGACGATGGACGGTAAGGAGCTGGTCGAAATCGACACCATCAACAT 17496 ||| || ||| ||||| ||| || | || ||| | |||||||||||| ||||||| Sbjct 1794 CACTTACTTCAAACTGACCTGGGATGGCGAAGAACTGATTGAAATCGACACCGTCAACAT 1853 Query 17497 GATTGAGAAGGTGAACGGCGTCGACCGGCTGGAGCAACACCGCCGCAATATCGGCCTGT 17555 | ||||||| ||| ||| | || || |||| || || || || ||| || |||| Sbjct 1854 GGTTGAGAAAGTGGGCGGAGAAGATCGTCTGGCACAGCATCGTCGTGCTATTGGTCTGT 1912 >seq2689 Length=1181 Score = 116 bits (128), Expect = 8e-22 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 11589 GGTGGAGCCGCTCGGCTATCTCATTAACGTGACGGAGTGGTGGGAAAACAGTGACCCGCC 11648 ||| || ||| |||||||| | ||| | | | || |||||| | ||| | || |||| Sbjct 1181 GGTTGAACCGTTCGGCTATTTAATTCGCCTTATTGAATGGTGGCAGAACGGCGATGCGCC 1122 Query 11649 AGGCACCTTCCGGCTTGATATTGGTGTACTGGAAAGCGGTATCACAGAGGCAATGTATCA 11708 |||||||||||||| ||||| || || |||| | ||| ||||| || || | ||||| Sbjct 1121 CGGCACCTTCCGGCTGGATATCGGCGTGATGGACACCGGCATCACCGAAGCCACCTATCA 1062 Query 11709 GGAAATGGAACGGCTGATTGCTGATGCCAAACCTGCAAGCCGCCACCTTATTGG 11762 || |||||||||||||| |||||| ||||| || |||||| || ||||| Sbjct 1061 CGAGCTGGAACGGCTGATTTTTGATGCGAAACCCGCTTCCCGCCATCTGATTGG 1008 >seq2573 Length=24683 Score = 87.8 bits (96), Expect = 4e-13 Identities = 190/282 (67%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 9558 ACCGACTGGCTTCAGTGGCTGACCCATCGCGCCGGGCGTTCGCGCACATGGTGGGCACCG 9617 ||||||||||| | ||||||||| | || || || ||||| ||||||||||| Sbjct 1110 ACCGACTGGCTATACTGGCTGACCTCCAGAGCAGGAAACTCCCGCACTTGGTGGGCACCC 1051 Query 9618 TCCGTGGGGGAACAGGTGCTGATTCTGGCCGTGGGCGGTGAACTCGACACGGCGTTCGTT 9677 || || || ||||| | | || || | || ||||| || ||| || || || Sbjct 1050 AGTGTAGGTGAGCAGGTTTTATTGCTTTCCATCGGTGGTGAGCTAACCACCGCCTTTGTA 991 Query 9678 CTGCCGGGGATTTATTCCGGTGATAACCCCGCGCCGTCTGCGTCGGCGGATGCCCTGCAT 9737 |||| | ||||| ||| ||| || || || || | || | || || |||| Sbjct 990 TTGCCAGCGATTTTCTCCAACGATTTTCCGGCACCCTCAACATCTCCCGAAGCGACGCAT 931 Query 9738 ATCCGT-TTCCCTGACGGGGCGGTGATTGAGTATGAACCCGAAACCAGTGCACTCACGGC 9796 | |||| || || || || || ||||| ||||||||||| || || | ||| | |||| Sbjct 930 A-CCGTATTTCCAGATGGCGCAGTGATGGAGTATGAACCGCAATCCGGCGCATTGACGGT 872 Query 9797 AAGCGGAATTAAAACGGCCAGCGTGACAGCTTCCGGTTCTGT 9838 || || |||||||| |||| || || || || | ||||| Sbjct 871 AACAGGTATTAAAACCGCCACAGTAACGGCATCAGAATCTGT 830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104463647070528