Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq2638 188 2e-43 seq2766 172 2e-38 seq2692 136 1e-27 seq2561 134 4e-27 seq2599 102 2e-17 >seq2638 Length=7155 Score = 188 bits (208), Expect = 2e-43 Identities = 420/625 (67%), Gaps = 4/625 (1%) Strand=Plus/Plus Query 9851 CGGCAGTATGGGCAGTCGCTTTCTGATCTTTCTGCTATCACCGGCGCAACTGGTGCGGAA 9910 || || ||||||||| | | |||||| | || || || ||||| || || || | | | Sbjct 3348 CGACAATATGGGCAGGCATTGTCTGATTTATCAGCCATTACCGGAGCCACGGGCGAGCAG 3407 Query 9911 TTGCGCAAGTATGATGAAGCCGCTCAGGAAATGGGGCGGACGACGGAATATAGTGCCAGT 9970 || ||| |||||| || || || || |||||||| |||| | || | Sbjct 3408 TTAAAGAAGCTGGATGAAAATGCCCAACGGATCGGACGGACGACTGAATTCGGCGCAACC 3467 Query 9971 CAGGCTGCTGAGTCTATAAAACTCATGGCATCGGCTAAACCAGAGCTAATGAAAACGTCA 10030 | ||| ||| | | ||||| ||||| || || || ||||| || |||||| | Sbjct 3468 CGCCTTGCCGAGGCATTTAAACTGATGGCTTCAGCCAAGCCAGAACTGCTGAAAAGTACC 3527 Query 10031 GAGGGATTGGTCACCGCAACTAAAAGCGCATTGGTTTTGGCGCAGGCTGCAGGGACCACA 10090 |||| | || ||||| ||| || | | | |||||||| | || | Sbjct 3528 GAGGTACTGACGTTGGCAACCGAAAAAGCGGTAATACTAGCGCAGGCATCCGGTATTGAT 3587 Query 10091 TTACCTGATGCAACTCGCACACTTGCATTGTCATTGAATCAGTTTGGCGCAGGAGCGGAA 10150 ||||| ||||| || || |||| || || ||| | ||||| || || || | || || Sbjct 3588 TTACCGGATGCGACCCGTGCACTGGCGTTATCACTTAATCAATTCGGTGCCAGTGCAGAG 3647 Query 10151 CAAGCAGATCGTTATATTAATGTTCTTGCTGCAGGTGCTAAATATGGTTCATCAGAAATA 10210 || || || || | |||||| || || || || || || ||||| ||| | || ||||| Sbjct 3648 CAGGCTGACCGCTTTATTAACGTACTGGCGGCTGGGGCAAAATACGGTGCTTCCGAAATC 3707 Query 10211 ACTGATACAGCCGATGCCATTAAAAATGGGGGTGTGGCCGCAGCACAAGCGGGGATCGGG 10270 | || ||||| | |||||||||||||||||| || ||||||||| | |||||| | Sbjct 3708 AACGAAACAGCGCAGGCCATTAAAAATGGGGGTACCGCAGCAGCACAATCAGGGATCAGC 3767 Query 10271 TTTGAGACGTTAAACGCTGCTATTCAGGTTCTCGCTGAACGTGAGATTAAAGGTGGTCAG 10330 ||||| |||| ||| ||||||||| | || || || || | |||||||| || | Sbjct 3768 TTTGAAGAGTTAGGCGCAGCTATTCAGATACTGGCGGAGCGCGGTATTAAAGGCGGCGAA 3827 Query 10331 GCCGGTACAGCGCTTCGCAACGTTATACTGACGCTGGAAAAAGGGACAGATCAAAGCCTA 10390 || || ||||| | || ||| | |||||| ||||||| || ||| ||| || Sbjct 3828 GCGGGCACAGCCATGCGTAACATGATACTGGCGCTGGAGCGTTCCACTGATAAAAATCTG 3887 Query 10391 AAACCATCAGTTGTTGGACT-TAGCCAGGCATTGGAGAACTTAAGTA-ATAAAAATCTAT 10448 ||||| || ||||||| | | | || ||| |||| |||| | | ||||| || | Sbjct 3888 AAACCTTCGATTGTTGGTTTGTCGTCA-GCACTGGA-AACTCTGGCAGGCAAAAACCTCT 3945 Query 10449 CAACAGCACAGGCCGTTAAATTATT 10473 | || || ||||| || |||||||| Sbjct 3946 CGACCGCCCAGGCAGTGAAATTATT 3970 Score = 152 bits (168), Expect = 2e-32 Identities = 242/347 (70%), Gaps = 0/347 (0%) Strand=Plus/Plus Query 8367 ATGAAGCCGTTGGTTAACTGTAAGGCTGTTGGTGCTACTGGTTTAACTGGTGGCTATGTA 8426 ||||| || || ||||||| ||||| | ||||| || || || || || | | ||| Sbjct 2159 ATGAAACCACTGATTAACTGCAAGGCACTCGGTGCCACAGGGTTGACCGGCAGTTTTGTC 2218 Query 8427 GATTGCACTACTTTAATCGATACGAATAAACAGTCTATTTCTGATTTGCCTGAAGGACCT 8486 |||||||| || | || ||||| || ||||||| |||||||||| |||| ||||| || Sbjct 2219 GATTGCACCACCCTGATGGATACCAACAAACAGTTTATTTCTGATATGCCGGAAGGGCCG 2278 Query 8487 GAAAAATCTTTAGGGTTTATTGACGATCCGGAAAATGAAGATTTTGCGGCATTGCTTACC 8546 |||||||| | || ||||| || ||||||| ||| ||||||| | | || || | Sbjct 2279 GAAAAATCCCTCGGCTTTATCGATGATCCGGCGAATCCCGATTTTGTGTCTTTTCTGAAT 2338 Query 8547 GCCGCAGCTGCACGTGAGACTGTACAGTTTTATATGGAATTGCCGAATGGCCGTACAGCC 8606 || || | || || || || |||||||| || | |||||||| || || || Sbjct 2339 GCAGCGGAAAAGCGCGACACCGTGCAGTTTTACATTGCCCTGCCGAATAAGCGCACGGCG 2398 Query 8607 ACGCAAATATTAGCGCTTTCAGGTTGGCAGTTGGCCGAGGTTTCTGCCCCTGCAAATGAA 8666 ||| || | ||||| || || ||| | || ||| || || || || | |||| Sbjct 2399 ACGATGGTACTGGCGCTGTCCGGCTGGGAAATGAACGACATTAACGCGCCGGCGAGTGAA 2458 Query 8667 GTGATCCAGATAGAGGTTAAGGGTAAGCAAAATAATATTGTATGGGG 8713 |||||||| || || ||||| || |||||||| | || ||||| Sbjct 2459 GTGATCCAAATCACCGTCAAGGGCAAACAAAATAACCTCGTCTGGGG 2505 >seq2766 Length=35022 Score = 172 bits (190), Expect = 2e-38 Identities = 328/475 (69%), Gaps = 6/475 (1%) Strand=Plus/Minus Query 41166 AAACAAGGCCCATTGCTGATGCGCGCCA-GCAACGATAAGCCTATCAAAAAAGGCTC-CA 41223 || ||||||||| ||| || |||| | || | | | ||| |||||||||||| || | Sbjct 30228 AACCAAGGCCCACCGCTTATACGCGTAAAGCTAGG-TGAGCTTATCAAAAAAGGTTCTCC 30170 Query 41224 TAATTCTATGGAAAACACTGTAAAAATAAACAGTGCAAGTTTAGTACATGCCGATTCGTT 41283 | || ||||| |||||||||||| |||||||| | |||||| ||| || || | Sbjct 30169 TGAT-CTATGAAAAACACTGTAATTTTAAACAGTATTAATTTAGTCAATGATGACTCACT 30111 Query 41284 GCAATACATTAAAACCCTGCCCGACAATTATATCGATGCAATCATTACTGATCCCCCCTA 41343 ||||| || || || || ||||||| || || |||| ||||| || || || Sbjct 30110 CAGCTACATAAAGACACTTCCAGACAATTGCATTGACCTAATCGCAACTGACCCGCCTTA 30051 Query 41344 CTACCGAGTTAAATCGAATAGTTGGGATAATCAATGGGCATCGGTTCCCGATTTTCTAGC 41403 | | ||||||| | ||||||||||||| |||| | || | | | | || | Sbjct 30050 TTTTCAAGTTAAAAGCTGTGGTTGGGATAATCAGTGGGAAAATGTCACTGCCTATTTATC 29991 Query 41404 GTGGCTTGATGAGTTTTTTGCTGAATTTTGGCGGGTACTGAAACCTAATGGTTCTCTTTA 41463 ||||||||||| | || ||||||||||| ||||| | || || | || |||||| Sbjct 29990 TTGGCTTGATGAAATGCTTTCTGAATTTTGGAGGGTATTAAAGCCAACAGGCAGTCTTTA 29931 Query 41464 TTTATTTTGTGGCCCCAAGTTATCGGCGGATACAGAAATATTGATGAGAGATAGGTTTAA 41523 | |||||||| | || | |||| ||||| ||||||||| | | || |||| || Sbjct 29930 CATGTTTTGTGGATCTAAACTTGCGGCTGATACTGAAATATTGGTTCGTGAGCGGTTCAA 29871 Query 41524 TGTGTTGAATCATATTGTTTGGGCAAAACCATCTGGCCGCTGGAAAGGGGCGAGTAAAGA 41583 | | || |||||||| ||||||| ||||| || || | ||| | | ||| |||||| Sbjct 29870 TATTTTAAATCATATAATTTGGGCTAAACCGTCAGGGCCATGGCGAAGAGCGTGTAAAGC 29811 Query 41584 GTCTTTCCG-ATCCTATTTCCCAGCTACTGAGCATGTTTTATTTGCTGAGCATTA 41637 | | || | | ||||| ||| || |||| || ||||||| |||||||| Sbjct 29810 TGATCTGCGTAGTTTTTTTCCAAGC-ACAGAGCGCATTATATTTGCAGAGCATTA 29757 >seq2692 Length=686 Score = 136 bits (150), Expect = 1e-27 Identities = 205/285 (72%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 43213 ATGGGTGCAGAAGA-ATGTCTACGTTCCTCTGACAGAGCCGCAAAAGGTCGGGATCGCTT 43271 |||||| |||||| || | |||| || ||||| || || || | | ||| || || Sbjct 452 ATGGGT-CAGAAGCCATATTAACGTGCCACTGACTGAACCACAGATAGCCGGCATTGCCA 394 Query 43272 CATTCTGCCCTTGGAACATTGGCCCGAGTAAATGTTTCACTTCTACGTTCTATCGAAAAT 43331 |||||||| | ||||| ||||| ||| ||| ||| |||| |||||||| |||||| Sbjct 393 GTTTCTGCCCATACAACATCGGCCCCGGTAGATGCTTCTCTTCCACGTTCTACCGAAAAC 334 Query 43332 TAAATTTAGGCGACCGCTTAGGCGCGTGCGCTGAAATTAAACGCTGGATACATGACGGCG 43391 | ||| || || | ||| || || |||||||||||||||||| |||||||| Sbjct 333 TGAATGCGGGTGATAGGCAAGGGGCTTGTCAGGAAATTAAACGCTGGATATTTGACGGCG 274 Query 43392 GGAAAGATTGCCG-TATTCGC---TCCAA--TAA---CTGTTACGGGCAGATAGAGCGCC 43442 | | ||||||||| | | | |||| ||| |||||| || ||| ||||||| | Sbjct 273 GCAGAGATTGCCGACAGACCCAAGGCCAAGCTAATGGCTGTTATGGTCAGGTAGAGCGAC 214 Query 43443 GTGAACAAGAAAGCGAATTAACGTGTTGGGGGCTGGATGAATAAA 43487 ||| || ||| |||||||| ||||||||| ||||||||| || Sbjct 213 GTGCTCAGGAATCGGAATTAACCTGTTGGGGGTTGGATGAATGAA 169 >seq2561 Length=11062 Score = 134 bits (148), Expect = 4e-27 Identities = 241/352 (68%), Gaps = 0/352 (0%) Strand=Plus/Minus Query 8366 AATGAAGCCGTTGGTTAACTGTAAGGCTGTTGGTGCTACTGGTTTAACTGGTGGCTATGT 8425 |||||||||| |||| ||||| ||||| | || || || |||||||| || | | | | Sbjct 2669 AATGAAGCCGCTGGTGAACTGCAAGGCACTGGGGGCCACCGGTTTAACCGGCAGTTTTAT 2610 Query 8426 AGATTGCACTACTTTAATCGATACGAATAAACAGTCTATTTCTGATTTGCCTGAAGGACC 8485 || ||||| || | || ||||| || ||||| | |||||| ||| |||| ||||| || Sbjct 2609 TGACTGCACCACCCTGATTGATACCAACAAACAATTTATTTCCGATATGCCGGAAGGTCC 2550 Query 8486 TGAAAAATCTTTAGGGTTTATTGACGATCCGGAAAATGAAGATTTTGCGGCATTGCTTAC 8545 || ||||| | || |||||||| || |||| |||| |||||| | || || || | Sbjct 2549 CGAGAAATCACTGGGTTTTATTGATGACCCGGGCAATGCCGATTTTACCGCGTTCCTGAA 2490 Query 8546 CGCCGCAGCTGCACGTGAGACTGTACAGTTTTATATGGAATTGCCGAATGGCCGTACAGC 8605 || || | || ||||| || ||||| || || | ||||||| || || || Sbjct 2489 TGCGGCTGAACAGCGCGAGACCGTCCAGTTCTACATTGCCCTGCCGAACCAGCGCACGGC 2430 Query 8606 CACGCAAATATTAGCGCTTTCAGGTTGGCAGTTGGCCGAGGTTTCTGCCCCTGCAAATGA 8665 ||| | | || || || || ||| | || ||| || || || || | ||| Sbjct 2429 GACGATGGTGCTCGCCCTGTCCGGCTGGGAAATGAACGACATTAACGCGCCCGCGAGTGA 2370 Query 8666 AGTGATCCAGATAGAGGTTAAGGGTAAGCAAAATAATATTGTATGGGGAACC 8717 ||||||||| || || ||||| || || ||||| | || ||||| ||| Sbjct 2369 AGTGATCCAAATCACCGTCAAGGGCAAACAGAATAACCTCGTCTGGGGCACC 2318 >seq2599 Length=15424 Score = 102 bits (112), Expect = 2e-17 Identities = 367/569 (64%), Gaps = 19/569 (3%) Strand=Plus/Plus Query 41275 CGATTCGTTGCAATACATTAAAACCCTGCCCGACAATTATATCGATGCAATCATTACTGA 41334 ||| ||| |||||| || ||||||||||| || || | ||| || || ||||| Sbjct 12615 CGACTCGCTGCAATTTATCAAAACCCTGCCGGATAACTGTATTGACCTGATAGCCACTGA 12674 Query 41335 TCCCCCCTACTACCGAGTTAAATCGAATA--GTTGGGATAATCAATGGGCATCGGTTCCC 41392 || || || | ||| |||||| |||| | ||||| | || |||| || | Sbjct 12675 CCCACCGTATTTCCGGGTTAAA--GAATGTGGCTGGGACAGGCAGTGGGAGGATGTCACG 12732 Query 41393 GATTTTCTAGCGTGGCTTGATGAGTTTTTTGCTGAATTTTGGCGGGTACTGAAACCTAAT 41452 | || || |||||||| || ||| | | |||| || ||||||||||||||||| || Sbjct 12733 GCTTACCTTGCGTGGCTGGACGAGATGCTGACTGAGTTCTGGCGGGTACTGAAACCCAAC 12792 Query 41453 GGTTCTCTTTATTTATTTTGTGGCCCCAAGTTATCGGCGGATACAGAAATATTGATGAGA 41512 || || ||| | || ||||| || | | | ||||| || | | || | Sbjct 12793 GGCAGCCTGTATATGTTCTGTGGTTCCCGTCTGGCCTCAGATACTGAGCTGCTCGTGCGT 12852 Query 41513 GATAGGTTTAATGTGTTGAATCATATTGTTTGGGCAAAACCATCTGGCCGCTGGAAAGGG 41572 || | ||||||||||| || |||||| | ||||| ||||| || |||| ||| || Sbjct 12853 GAACGTTTTAATGTGTTAAACCATATTATCTGGGCGAAACCGTCCGGCCCGTGGCGCAGG 12912 Query 41573 GCGAGTAAAG-AGTCTTTCCGATCCTATTTCCCAGCTACTGAGCATGTTTTATTTGCTGA 41631 || ||||| | | | | ||| ||||| || || || || | || | ||||| || Sbjct 12913 CAGAATAAAGAAAGCCTGCGGAT-GTATTTTCCGGCCACAGAACGCATTATTTTTGCCGA 12971 Query 41632 GCATTATGGCGCAGAGGGTTTT-----GCAAAAGGGAATGCAGGTTATGCGTCAAAATGC 41686 ||||| | ||||| | | ||||| || || ||| | | ||||| Sbjct 12972 ACATTA-----CCAAGGGTCGTATCACCCGAAAGGCGAT---GGCTATTCCAAACAATGC 13023 Query 41687 CAAGAGCTGAAGCAGCAGGTATATGCCCCGCTTATTCAGTATTTTCGTGAAGCTCGTTCG 41746 | | ||||| ||| ||||| | ||||| ||| | || || ||||| || || Sbjct 13024 CGGGCCCTGAAACAGTCGGTATTTAAACCGCTGATTGATTACTTCCGTGATGCCCGAAAA 13083 Query 41747 CGACTCGGTATTTCGGCAAAAGAAATTAATGAAGTCACAGGAACTCAGATGTGTAGCCAT 41806 ||| || | |||| ||||||||| ||| | || || | |||||| || || Sbjct 13084 GCACTGGGCGTGACGGCGAAAGAAATTCATGCGGCAACCGGTAAGCAGATGGCCAGTCAC 13143 Query 41807 TGGTTTAGCCAGACTCAATGGCAGCTACC 41835 ||||| || | | ||||||||| |||| Sbjct 13144 TGGTTCAGTGATAGCCAATGGCAGTTACC 13172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148158160969568