Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq348 176 2e-39 >seq348 Length=55286 Score = 176 bits (194), Expect = 2e-39 Identities = 295/419 (70%), Gaps = 6/419 (1%) Strand=Plus/Minus Query 3063 GATGTCCAGTTGCTGGAGACGCGGGCATTCAACATCGAGGAAATCTGCCGCTGGTATCGC 3122 |||| |||| |||| ||| |||| || || | ||||| |||||||| |||| || Sbjct 22178 GATGCCCAGCTGCTTGAGTCGCGCGCGTTTTCGGTGGAGGAGATCTGCCGGTGGTTCCGT 22119 Query 3123 GTTCCGCCGTTTATGGTCGGCCACAGCGAGAAATCGACAAGCTGGGGAACTGGGATCGAA 3182 ||||| ||||| ||||| ||||| |||||| ||||| |||||||| || |||||||| Sbjct 22118 GTTCCTCCGTTCATGGTTGGCCATGCCGAGAAGTCGACCAGCTGGGGCACGGGGATCGAG 22059 Query 3183 CAACAGACGCTCGGCTTTTTGACATTCACCCTGCGGCCTTGGTTGACG-CGGATTGAACA 3241 || |||| | ||||||| |||| || ||||| | || ||| | ||| || |||||||| Sbjct 22058 CAGCAGATGATCGGCTTCCTGACTTTTACCCTCGGCCCCTGGCT-ACGTCGAATTGAACA 22000 Query 3242 GGC-AGCGCGACGGTCCCTGCTGAGGCCGGGAGAGCGCGATCAGTTTTATGCGGAGTTCT 3300 ||| | | | || || ||| ||||| |||||| ||| || || ||||| Sbjct 21999 GGCGATCAGTAAGG-ATCTTCTGTCGCCGGCTGAGCGCACCAAGTACTACCCGAAGTTCG 21941 Query 3301 CCGTCGAAGGGCTGTTGCGAGCCGATAGTGCAGGCCGAGCGGCGTTCTATTCAACGATGA 3360 | || |||||||| | || ||||| || || || || ||||| ||||| || | ||| Sbjct 21940 CGGTAGAAGGGCTTCTTCGCGCCGACAGCGCGGGTCGCGCGGCCTTCTACGCAGCCATGG 21881 Query 3361 CCCAAAACGGCCTGATGACGCGTGACGAATGTCGGGCGAAGGAAAACCTGCCGCCGATGG 3420 | | |||||| | |||| || |||||| || | | ||| ||| || |||| Sbjct 21880 TCAACAACGGCATCCTGACCCGCGACGAAGTGCGTGAGCTGGAGGACCGAGAACCCATGG 21821 Query 3421 GTGGCAATGCAGCGGTGTTGACGGTTCAGTCGGCA-TTGCTCCCAATCGACAAGCTCGG 3478 | ||||| || || || |||| || ||| | ||| |||| || | |||||||| || Sbjct 21820 GAGGCAACGCCGCTGTACTGACCGTACAGACTGCACTTGC-ACCGCTGGACAAGCTTGG 21763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175440433067936