Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2252 120 7e-22 seq2162 111 4e-19 >seq2252 Length=1130325 Score = 120 bits (132), Expect = 7e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || ||||| | |||||||||||||| || || ||||| Sbjct 562700 ATTCCACCGCGAAGGCGGAGAACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCG 562759 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || || || || || || || ||||| || || || | | ||| ||||| || Sbjct 562760 GACAGGGTCCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGG 562819 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| |||||||| ||||||||||| || || ||||| | ||| || | || Sbjct 562820 GGGATTCCCTCTTTATCTTGAATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACCCTCA 562879 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||| || || | || || || || || |||||| Sbjct 562880 ACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCATT 562930 Score = 98.7 bits (108), Expect = 2e-15 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||| ||||| || || ||||| || | ||| | || || Sbjct 563173 AAGGACGAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATC 563232 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || ||||| || || || | | ||| || || || || |||||||||||||| Sbjct 563233 TTCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCTTCTTTATC 563292 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT---TCTACCTCTAGTGTAAT 104523 || ||||| || || || ||||| | ||||| || | || ||||| || || || Sbjct 563293 TTGGATCTTGGCCTTCACGTTTTCGATAGTATC---AGATCCCTCGACCTCCAGGGTGAT 563349 Query 104524 AGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || | || || || || || ||||| Sbjct 563350 GGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563385 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| || || | || || || || || ||||||||||| ||||| ||||| Sbjct 562559 TTACCGGCAAAGATGAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 562618 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | ||| ||| ||| ||||| || || || ||||| ||||| Sbjct 562619 GCCTTCACATTCTCGATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTGCCAGTG 562678 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || || || || |||||| Sbjct 562679 AGGGTCTTGACGAAGATTTGCATT 562702 >seq2162 Length=74254 Score = 111 bits (122), Expect = 4e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | ||| || || || | || || || ||||| || |||||||| Sbjct 48872 ATTCCTCCTCGGAGGCGAAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCG 48813 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || | || || || ||||| ||||| || || || || | |||||||| || Sbjct 48812 CTCAAGGTGCGGCCATCCTCCAGTTGCTTTCCGGCGAAGATAAGACGTTGTTGATCTGGG 48753 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| || |||||||| ||||| || || || | || || ||| Sbjct 48752 GGAATTCCTTCTTTGTCTTGAATCTTAGCTTTCACGTTCTCGATGGAGTCAGATCCTTCA 48693 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || ||||| || || | ||||| || || ||||||||| Sbjct 48692 ACCTCGAGAGTGATGGTCTTTCCTGTCAACGTTTTCACGAAGATCTGCATT 48642 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || ||||||||| | ||| | || || || ||||| || ||| Sbjct 49067 GTCGATTCCTTTTGGATGTTATAGTCACTCAAAGTGCGGCCATCCTCAAGTTGCTTCCCA 49008 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||| ||||| || || ||||||||||| || |||||||| ||||| Sbjct 49007 GCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGAATCTTAGCTTTG 48948 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | | ||| || || || | ||| || || || || || || || Sbjct 48947 ACGTTTTCGATCGAATCAGAGCCCTCGACTTCCAATGTGATCGTTTTGCCCGTGAGGGTC 48888 Query 104543 TTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 48887 TTCACGAAAATCTGCATT 48870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151356149435712