Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq2599 188 2e-43 seq1458 167 6e-37 seq2629 152 1e-32 seq2774 120 8e-23 >seq2599 Length=15424 Score = 188 bits (208), Expect = 2e-43 Identities = 377/546 (69%), Gaps = 12/546 (2%) Strand=Plus/Plus Query 35505 CTCACCAAAGAACAGCATGAGTGGCTGAATGGCTGGCTTGAACTGTGGGGCGCATGGGTT 35564 || || ||| |||||| || ||| | || |||| | | ||||||| ||||||||| Sbjct 11615 CTAACAAAACCACAGCAGGACTGGATTGATAACTGGTTAAATTTGTGGGGGGCATGGGTT 11674 Query 35565 TATTCAGGTCGTCTGGAAAAGCGCATGAGCAGCGTAATAGCGAAGTTCATGGAGAGCGTA 35624 | || | | || |||||| || | | | || ||||||||| || || Sbjct 11675 CACAGTGGCAGAATCGATAAGCGCCAGATAAACATGATTTATAAGTTCATGATGACTGTT 11734 Query 35625 GAGCCGGG-AAGAGTTATGACAAGGCCAATGTGCAATGATGATGATGGAATGTTGATTTC 35683 ||||| | ||| | | ||| | || ||||||||||||||||||| ||||||||||| Sbjct 11735 GAGCCTCGCAAGGGGCAAGACC-GCCCTGTGTGCAATGATGATGATGGTATGTTGATTTC 11793 Query 35684 TCAGGTCGTCGATTCCGTCATGTACATTGACAAGAAAGCCTTTGGCATCCTCCTCAGCTA 35743 |||||| |||||| |||| |||| ||||||| | ||||||| ||| || | |||||||| Sbjct 11794 TCAGGTGGTCGATGCCGTTATGTGCATTGACCAAAAAGCCTATGGGATTTTACTCAGCTA 11853 Query 35744 CTACGCTCATGGTTCATCTAAGCGAGCAATTGCATCCTACTATCACGCGACTGCAAAGCC 35803 ||||||||| || |||| |||| ||||| || | || |||||| || ||| || || Sbjct 11854 CTACGCTCACGGCGCATCGAAGCTGTCAATTTCAACTTATTATCACAAGATTGCGAAACC 11913 Query 35804 ACGCAAGATG-TGTGGACGTGGTGGCGAGGGATGGAGAAAACCTTCACTGGCAACCTGTA 35862 |||| ||| || | || ||||| | | | || || ||||| | | || ||| Sbjct 11914 CCGCAGAATGATGACG-CGCTCTGGCGGGCGCTTAAGGAAGCCTTCTCGTGGGACATGTC 11972 Query 35863 GAAACGAAATTGACGACATCCTGAAAGCGTCATTATTT--GTTTTATACCAGCCAATGCA 35920 | ||| | || || || ||| ||| || | ||| | ||||| ||||| |||| Sbjct 11973 GCCGTGAAGTGGATGAAATTCTGGCAGC--CAGTGTTTACCTATTATATCAGCCTCTGCA 12030 Query 35921 AAATGCTTTCAAAATGCGTAAACGTGTTGAGAAAGTTAAGCATGTTGCTGTTAAAAGCCT 35980 |||||| || || ||||||||||| |||||| | || | |||| | || | | Sbjct 12031 AAATGCATTTAATTCACGTAAACGTGTAGAGAAAATCAAAAAGATTGC-CTAGAACGTGT 12089 Query 35981 TGACATGCAATTAGCCATTTAGCCATAATTAGAAGGTAA-GCTGCCGTTAGTGACTCTTA 36039 ||||| ||| ||| | | ||| |||||| ||||| | |||||| |||| ||||| Sbjct 12090 TGACA-CTAATGAGCAAATGAGCAATAATT-TTTGGTAAGGTTGCCGTCAGTGTTTCTTA 12147 Query 36040 AGTTGC 36045 || || Sbjct 12148 GGTGGC 12153 Score = 104 bits (114), Expect = 6e-18 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 21635 TTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAGCCTTTTCG 21694 ||| || ||||| || | ||| |||||| || |||| ||||| || |||||| | Sbjct 83 TTGGTCTTGCCACTTGCGTGTTTGCAATTGACCCTCAATATAAATCTGGCTGCCTTTCCT 142 Query 21695 CAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGCCACTCCGT 21754 ||||||||| | ||||| |||||||||||| ||| || ||||| |||||||| || || Sbjct 143 CAGATATTCACCGGCAACTTCTGCCAGTTTTCCGAACAGAACCACACGGTGCCATTCTGT 202 Query 21755 CTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAACTGT 21811 | ||| | |||| || | |||||| || |||| ||| || ||||| | ||| Sbjct 203 TTTTTCCCTCAGCTCACCTGATTGCTTGTCTTTCCATGCTTCAGAGGTAGCCAGTGT 259 >seq1458 Length=11418 Score = 167 bits (184), Expect = 6e-37 Identities = 247/348 (71%), Gaps = 3/348 (1%) Strand=Plus/Minus Query 21567 CCACCAAGCATTTGCATGGTTCCACCAA-CGCCT--ACGATAACTTCGGTAGTGAACCTA 21623 || || | ||||||||| || || |||| || | || | ||||| || ||| | | | Sbjct 11201 CCGCCTAACATTTGCATTGTACCGCCAATCGGGTTGACAACGACTTCAGTCGTGTAACGA 11142 Query 21624 TCCTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCA 21683 ||||| || || |||||||||||||| | ||| |||| ||||| | ||| |||| | Sbjct 11141 TCCTGACCACTCTGATCCTGCCATTTACGGGTCTGCAAAGCACCTTCGATATAGACCTGA 11082 Query 21684 GAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGG 21743 |||||||| ||||| || || | || | |||||||||||| ||| ||| ||||| ||| Sbjct 11081 GAGCCTTTACGCAGGTACTCACCAGCGACTTCTGCCAGTTTACCGAACATGACCACTCGG 11022 Query 21744 TGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTA 21803 ||||| || || | ||| | ||| || ||||||||||||||||| || ||||| Sbjct 11021 TGCCATTCGGTTTTCTCTCTCATCTCACCGGTTTGCTTATCACGCCAGCTCTCGGACGTG 10962 Query 21804 GCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGC 21863 || | |||| ||| |||| ||| || || ||| | | ||| ||||| ||| Sbjct 10961 GCCAGAGTAATGTTGGCAACTGCTCCACCATTCGGCATATAGCGAACTTCCGGATCCTGC 10902 Query 21864 CCAAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCATT 21911 || | ||| | | || || || |||||||||||||| |||||| Sbjct 10901 CCCAAATTACCCACTAAAATAACTTTGTTTACGCCTCTGCTGGCCATT 10854 >seq2629 Length=15125 Score = 152 bits (168), Expect = 1e-32 Identities = 265/384 (69%), Gaps = 6/384 (2%) Strand=Plus/Minus Query 21564 TTGCCACCAAGCATTTGCATGGTTCCACCAACGCCTACGATAACTTCGGTAGTGAACCTA 21623 || ||||| ||||||||||| | || || | ||| | ||||| || ||| | | Sbjct 12597 TTACCACCTAGCATTTGCATTGACCCGCCGATATTTACTACCACTTCCGTTGTGTATCGG 12538 Query 21624 TCCTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCA 21683 || || |||||||| || |||||||| | || ||| |||||| | || |||| Sbjct 12537 TCTTGACCGCTTTGGTCTTGCCATTTACGCGTTTGCAGAGAGCCTTCGATGTATACCTGG 12478 Query 21684 GAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGG 21743 |||||| ||||||||||| |||| ||| || | || ||| |||||||| || Sbjct 12477 CTTCCTTTTTTCAGATATTCGCCTGCAACTTCAGCTAACTTGCCGAAAATTACCACTCGA 12418 Query 21744 TGCCACTCCGTCTGCTC---CTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGAC 21800 ||||| || || | ||| | || || || | ||| || |||||||| ||| || Sbjct 12417 TGCCATTCGGTTTTCTCGCGCATT---TCACCCGATTGTTTGTCACGCCACGATTCCGAT 12361 Query 21801 GTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCA 21860 || || | ||| || ||||| | ||| |||| ||| |||| ||||| || || Sbjct 12360 GTGGCTAGTGTGAGATTTGCTACTGCTCCCCCTGCTGGCATGTATCGAATTTCAGGGTCT 12301 Query 21861 TGCCCAAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCATTTATGCCGCC 21920 || || | | |||| || | ||| ||||| ||||||||| | || |||||||| || ||| Sbjct 12300 TGGCCTAAGTGACCTATGAGGATTACCTTGTTTACGCCTTTACTAGCCATTTACGCTGCC 12241 Query 21921 TGTTTTAGCTCGTTAACTCTGATG 21944 | ||| || || |||| |||||| Sbjct 12240 TCTTTAAGTTCTTTAATCCTGATG 12217 Score = 140 bits (154), Expect = 8e-29 Identities = 122/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 34222 GATAAACTTAAGATTCGAAAACTCGCCTTAAAGCCCCGCAGTTACTGGATTAAACAAGCC 34281 |||||||| || || || | || |||| ||||||||||| |||||||||||||| Sbjct 152 GATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTTATTGGATTAAACAAGCA 93 Query 34282 CAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCGCGACTTACCATGTATCTCGTGC 34341 ||||||||||| ||||| | ||||||||||||||||| || || ||||| || || ||| Sbjct 92 CAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATTTGCCATGCATATCATGC 33 Query 34342 GGAACGCTCACGTCTGCTCAGTGGGATGCCGG 34373 |||||| | ||||||||||||||||| || Sbjct 32 GGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 Score = 123 bits (136), Expect = 6e-24 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 29891 GTCGATTACCTGACACTAATGACCGCTGAGAAGGCCGATCGCAACGACCTTGCTTACGGC 29950 || ||||| | || || |||| |||| || || || |||||||| |||| ||||| Sbjct 4145 GTGGATTATTTAACGCTGATGAAAGCTGGCAAAGCAGACCGCAACGATATTGCCTACGGT 4086 Query 29951 ATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGAT--TGCGTTGTTGTGCTTC 30008 ||||||||||| || ||| | || || |||||||||||| | || || | | | | Sbjct 4085 GAAATCACCAAAGGCCTCAAGCAGCTAGCAAAAGAGCTTGATACTACGGTGGTAT--TAC 4028 Query 30009 TGACACAGCTTAACCGCGCACTGGAAAGCCGAACCAATAAACGCCCATTACCAAGTGACT 30068 | |||||||| |||||| ||| ||| ||||||| || || || | ||||| || Sbjct 4027 TAACACAGCTAAACCGCAAACTTGAAGATAGAACCAACAAGCGACCTATGCCAAGCGATA 3968 Query 30069 CACGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTGGGGAT 30117 || ||||| || || || || |||||||||||||| ||| ||||||| Sbjct 3967 GCCGTGATACGGGTCAAATCGAGCAGGATTGCGATTACTGGATGGGGAT 3919 Score = 98.7 bits (108), Expect = 2e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 23854 CGATCGCGCACCGTCTTGCGGTTGGCATCAATTAGCTTTGGAATTTCCTTCAGTTCAGCA 23913 || || ||||| || || ||||| || ||||||||||| ||||| || | || || Sbjct 9541 CGCTCTCGCACAGTTCGTCGATTGGCGTCGATTAGCTTTGGTATTTCTTTTAACTCTGCT 9482 Query 23914 ACAAGGTCTTTGCCAAGACCATCGAGATATGTTTTCGTCTGCGCAACTTTATACGCCAGA 23973 || | |||||| || || ||||| || || ||||| | || || ||||| || |||| Sbjct 9481 ACTAAGTCTTTACCGAGCCCATCAAGGTAAGTTTTTGATTGAGCGACTTTGTAGGCCAAT 9422 Query 23974 GAAGCGATCTCCTTTCTGCCCTTTGCCGTTGTGATATCAGGCACAAAGGACATAACTTC 24032 ||||| || ||||| | || || | || |||| |||||| | ||| || ||||||| Sbjct 9421 GAAGCAATTTCCTTGCGACCTTTAACAGTGGTGACATCAGGAATAAAAGAATTAACTTC 9363 >seq2774 Length=20939 Score = 120 bits (132), Expect = 8e-23 Identities = 72/76 (95%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 36065 GGGTCAGTCGTATAAAGGTCATTACGGAAGGCTGTTAACCTTCTTATCGTGGTTCGAGTC 36124 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 20146 GGGTTAGTCGTATAAAGGTTATTACGGAAGGCTGTTAACCTTCTTATCGTGGTTCGATTC 20087 Query 36125 CACGCTGTCCCGCCAA 36140 |||||| ||||||||| Sbjct 20086 CACGCTATCCCGCCAA 20071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124811755007840