Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq2629 131 4e-26 seq2766 107 5e-19 >seq2629 Length=15125 Score = 131 bits (144), Expect = 4e-26 Identities = 239/349 (68%), Gaps = 16/349 (5%) Strand=Plus/Minus Query 18868 ATGGCTAAACCAGCGCGAAGACGATGCAAAAACGAAGAATGTAGGGAATGGTTTCACCCT 18927 |||||||| ||| |||| | || ||||||| |||||| || |||||||| || Sbjct 338 ATGGCTAACCCAAGGCGACGGCGCTGCAAAAT------ATGTAGAGAGTGGTTTCATCCC 285 Query 18928 GCATTCGCTAATC---AGTGGTGGTGCTCTCCAGAGTGTGGAACCAAGATAGCACTCGAG 18984 | || ||| ||||||| || |||||| ||| | | ||||| || || Sbjct 284 AAGTACGAAAATATAGAGTGGTGTAGC---CCAGAGCACGGAGCAGAATTAGCAATCAAG 228 Query 18985 CGACGAAGCAAAGAACGCGAAAAAGCGGAAA--AAGCAGCAGAGAAGAAACGACGACGAG 19042 |||||||| || || | |||||| ||| || | ||| ||||| || | | | Sbjct 227 CGACGAAGTAAGGAGAGAGAAAAACTAGAAGCCAAACTCAAGA-AAGAACAGAAG-CAAA 170 Query 19043 AGGAACAGANNNNNNNNNNTAAACTGAAGATTCGAAAACTCGCCTTAAAGCCCCGCAGTT 19102 | ||| | |||||| || || || | || |||| |||||||||| Sbjct 169 AAGAAGTAAAAGCCCGCGATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTT 110 Query 19103 ACTGGATTAAACAAGCCCAACAAGCCGTAAACGCCCTCATCAGAGAAAGAGACCGCGACT 19162 | |||||||||||||| ||||||||||| ||||| ||||||||||||||||| || | Sbjct 109 ATTGGATTAAACAAGCACAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATT 50 Query 19163 TACCATGTGTCTCGTGCGGAACGCTCACGTCTGCTCAGTGGGATGCCGG 19211 | ||||| | || ||||||||| | ||||||||||||||||| || Sbjct 49 TGCCATGCATATCATGCGGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 >seq2766 Length=35022 Score = 107 bits (118), Expect = 5e-19 Identities = 239/356 (67%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 21544 GAAGGTGTCAGATACAAACCATATAAGGACGTAGTCGGTGTGTTGACTGTGTGTTATGGC 21603 |||||||||| ||| || |||||| | || ||||| |||||| | || || |||| ||| Sbjct 26394 GAAGGTGTCAAATATAAGCCATATGAAGATGTAGTTGGTGTGCTCACGGTTTGTTTTGGG 26335 Query 21604 CACACCGGAAAAGACATCATGCCTGGTAAAACGTATACCGAAGCAGAATGCAAAGCCCTC 21663 ||||| || | ||||| || || |||||| ||| | ||| | ||||| ||| | Sbjct 26334 CACACAGGCACTGACATTATCCCCACTAAAACTTATTCAGAATCTGAATGTTTAGCTTTG 26275 Query 21664 CTGAATAAAGACCTTATCACTGTCGCCAGACAAAT--TA-ACCCGTACATCAAAGTAGAT 21720 || | |||||||| | || ||| ||| | || |||| || ||||| ||| Sbjct 26274 CTTGAAAAAGACCTCAGCAAAGTC---AGAAAGGGCGTAGACCCTCTAATTAAAGTCGAT 26218 Query 21721 ATACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAATGTGGGCGCAGGCAAT 21780 || || | || |||| |||| |||| || || | |||||| || ||| |||| | Sbjct 26217 ATTGACGATAACACCCGCGCCGCTATTTATTCCTTTGCTTACAACGTAGGCACAGGTGCT 26158 Query 21781 TTCAGAACATCGACGCTTCTTCGCAAAATCAATCAGGGTGATATCAAAGGTGCATGTGAT 21840 || || ||| | || ||| | ||| ||||||||| ||||| || || Sbjct 26157 TTTGCTCGTTCTACGATGCTGAAGAAACTGAATGCAGGTGATATCGCTGGTGCTTGCAAT 26098 Query 21841 CAGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGCCTGATGACTCG 21896 | || |||||||| || || || ||||| | ||||||||||| || || || Sbjct 26097 GAATTAAAACGCTGGACTTATGCAGGGGGTAAAGAGTGGAAAGGCCTAATAACACG 26042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132325099470304