Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq1458 495 2e-135 seq2629 107 1e-18 seq2599 102 5e-17 seq2557 102 5e-17 seq2600 100 2e-16 >seq1458 Length=11418 Score = 495 bits (548), Expect = 2e-135 Identities = 774/1101 (70%), Gaps = 12/1101 (1%) Strand=Plus/Plus Query 71540 CGGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGAACACGCCCAGCTCGGCAAATATTTG 71599 ||| |||||||| || | || ||| ||||||| || ||||| || | || ||||| Sbjct 805 CGGCGGTTTTGCTTATTTGGCAGAGTTGTCAAAAAATACGCCAAGTGCCGCCAATATCAA 864 Query 71600 TGCTTATGCGGATATCGTTCGTGAACGCGCGGTTGTTCGTGAAATGATTTCCGTCGCAAA 71659 ||||||||| ||||| || ||||| || || || ||||| || |||||| | || ||||| Sbjct 865 TGCTTATGCCGATATTGTCCGTGAGCGTGCTGTCGTTCGCGATATGATTGCAGTTGCAAA 924 Query 71660 TGAAATAGCCGAAGCTGGATATG-CGCAGGATGGCAGGGGCAGCAATGAATTGCTGGATA 71718 |||||| ||||| || || || | | || | ||| | |||| | ||||| || ||| Sbjct 925 TGAAATTGCCGATGCGGGGTACGACCCACAAGGGC-GAACCAGCGAAGAATTACTTGATC 983 Query 71719 TGGCCGAGCGCCGCGTTTTTGAAATAGCTGAAAAACGACAAA--AGAGCGGTAGTGGTCC 71776 |||| ||| || || || | || || ||||| || || | || | || | || Sbjct 984 TGGCTGAGTCACGTGTATTCCAGATCGCAGAAAACCGTGCAAGCAAAGACGAAG--GCCC 1041 Query 71777 AAAAGATATCGCCAGCATTCTCGATGCAACGGTATCTCGCATAGAAGAGTTGTTTCAGCG 71836 ||||| || | | || || || | ||| || || || ||| || | | ||||| Sbjct 1042 AAAAGGGATTGAGCGAATCCTTGAAGAAACTGTTGAACGTATTGAACAGCTTTACCAGCG 1101 Query 71837 ACCACATGATGGTGTAACGGGGCTTGATACGGGATTTACCGATCTCAATAAGAAGACGGC 71896 ||||||||||||||||| ||| || ||| || | | ||||| ||||||| ||||| Sbjct 1102 CCCACATGATGGTGTAACCGGGGTTTCTACTGGCTATCAGGATCTGGATAAGAAAACGGC 1161 Query 71897 AGGGCTTCAGCCGTCCGATCTCATCATTGTCGCCGCCCGCCCATCTATGGGGAAGACCAC 71956 ||| || || || || || || || || || || || || || ||||| || || || Sbjct 1162 AGGTCTGCAAAAATCTGACCTGATTATCGTTGCTGCTCGTCCTTCAATGGGTAAAACAAC 1221 Query 71957 GTTTGCGATGAATCTCGTCGAAAATGCCGCAGTTCGTAACGATAAGCCCGTATTGGTTTT 72016 ||||||||||| || |||||| || || | | ||||| || || || | || Sbjct 1222 CTTTGCGATGAACCTGTGCGAAAACGCAGCGATGATGCAGGATAAACCAGTGTTAATCTT 1281 Query 72017 TAGCCTTGAGATGCCGAGCCACCAGCTGATGATGCGCTCACTGGCTTCTCTTGCACGCGT 72076 || || |||||||| | | || | |||||||| |||| || ||| | ||||| Sbjct 1282 CAGTCTGGAGATGCCCGGTAATCAAATCATGATGCGTATGTTGGCATCACTTTCCCGCGT 1341 Query 72077 TGATCAGACTCGTATTCGGACAGGGCAACTTAACGACGAGGATTGGGCGCGGGTTTCTGG 72136 |||||||| |||||||| || || || ||| | || || || ||||| || |||| | Sbjct 1342 GGATCAGACACGTATTCGAACCGGCCAGCTTGATGATGAAGACTGGGCCCGTATTTCGAG 1401 Query 72137 CGCAATGGGTATTCTGTTGGACAAGCAGAATATTTTTATTGATGACTCAAGCGCCCTGAC 72196 | ||||| ||| || |||| || | ||||| | ||||||||| ||| || |||||| Sbjct 1402 TACGATGGGGATTTTGCTGGAAAAACGCAATATGTATATTGATGATTCATCCGGCCTGAC 1461 Query 72197 GCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGTTTGAGCAT 72256 ||| | || | || ||||| || | | |||| || |||| || | || || Sbjct 1462 TCCGTCTGAAGTGCGCTCCCGTGCGAGAAGAGTTTTCCGTGAGCATGGCGGGCTTAGTAT 1521 Query 72257 GATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCGAACGCT 72316 ||| |||||||||||||||||| | ||||| || || || ||||||||||| | Sbjct 1522 GATCATGATCGACTACCTGCAATTAATGCGGGTGCCTTCCCTCTCTGATAACCGAACATT 1581 Query 72317 GGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGT 72376 ||||||||| || || || || || || || ||||||||||| |||||||| || || || Sbjct 1582 GGAAATTGCAGAAATATCCCGTTCCCTTAAAGCGTTGGCGAAAGAATTACAGGTGCCTGT 1641 Query 72377 GGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAA 72436 || || | || || ||||| || || || ||||| || || ||||| ||||| || Sbjct 1642 TGTAGCGCTCTCCCAGCTTAACCGTAGTCTGGAGCAGCGGGCTGATAAACGTCCGGTTAA 1701 Query 72437 TTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTA 72496 || ||| | ||||||||||| | ||||||||||| || ||| | || |||||| | || Sbjct 1702 CTCTGATCTGCGTGAATCAGGCTCTATTGAGCAGGATGCTGACTTAATCATGTTTATCTA 1761 Query 72497 TCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATC-- 72554 ||| || || || |||||| | || ||| |||| || | || || ||||||| Sbjct 1762 TCGTGATGAGGTGTATCACGATAACAGTGAACTGAAAGGTGTAGCAGA---AATTATCCT 1818 Query 72555 -GGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTC 72613 || || || || ||||||||||| || || || || || | ||||||||||||| || Sbjct 1819 TGGTAAACAGCGTAATGGCCCAATCGGTACAGTAAGGCTGACATTTAACGGCCAATGGTC 1878 Query 72614 ACGGTTTGATAACTATGCCGG 72634 ||||| ||||| ||||| || Sbjct 1879 GCGGTTCGATAATTATGCAGG 1899 Score = 134 bits (148), Expect = 8e-27 Identities = 286/426 (67%), Gaps = 12/426 (3%) Strand=Plus/Plus Query 21063 GGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTATATA 21122 || ||||||||||| || | | |||| ||||||| || ||||| | | ||||| Sbjct 10867 GGCGTAAACAAAGTTATTTTAGTGGGTAATTTGGGGCAGGATCCGGAAGTTCGCTATATG 10926 Query 21123 CCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGAATCATGGCGCGACAAG 21182 || ||||| || || || | | | | | || ||| || ||||| || ||| Sbjct 10927 CCGAATGGTGGAGCAGTTGCCAACATTACTCTGGCCACGTCCGAGAGCTGGCGTGATAAG 10986 Query 21183 CAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAACTT 21242 ||||| || | || |||| |||| |||||||| ||| || ||||||| ||||| Sbjct 10987 CAAACCGGTGAGATGAGAGAGAAAACCGAATGGCACCGAGTGGTCATGTTCGGTAAACTG 11046 Query 21243 GCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAACTT 21302 || ||| | || ||||||| | || ||||| ||||||||||| |||||||| | Sbjct 11047 GCAGAAGTCGCTGGTGAGTACCTGCGTAAAGGCTCTCAGGTCTATATCGAAGGTGCTTTG 11106 Query 21303 AAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATCGTC 21362 | |||||||| ||| ||| | ||| || ||||||||||| ||| | | ||| Sbjct 11107 CAGACCCGTAAATGGCAGGATCAGAGTGGTCAGGATCGTTACACGACTGAAGTCGTTGTC 11166 Query 21363 AGCCAG---GGCGGCACCATGCAAATGATCGGCGCTCGCCGTGACGATTCACAG--TCCT 21417 | || | ||||| || ||||||||| | |||| ||| ||| || |||||| | || Sbjct 11167 AACCCGATTGGCGGTACAATGCAAATGTTAGGCGGTCGTGGTGGCGCATCACAGGATGCT 11226 Query 21418 C-------AAATGGCTGGGGGCAATCAAACCAACCTCAAAACCACCAGCAATACAGTGGT 21470 | | ||||||||| || || | || || || ||||||| |||||| Sbjct 11227 CCGGCACAAGGCGGCTGGGGGAAACCACAACAGCCACAGGCATCTCAGCAATTCAGTGGC 11286 Query 21471 GGCGGT 21476 |||||| Sbjct 11287 GGCGGT 11292 >seq2629 Length=15125 Score = 107 bits (118), Expect = 1e-18 Identities = 218/324 (67%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 21063 GGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTATATA 21122 || |||||||| || ||||| || ||| | | || |||||||| || || | || || Sbjct 12263 GGCGTAAACAAGGTAATCCTCATAGGTCACTTAGGCCAAGACCCTGAAATTCGATACATG 12322 Query 21123 CCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGAATCATGGCGCGACAAG 21182 ||| || || || || | || |||| | || || ||||| ||||| ||||| Sbjct 12323 CCAGCAGGGGGAGCAGTAGCAAATCTCACACTAGCCACATCGGAATCGTGGCGTGACAAA 12382 Query 21183 CAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAACTT 21242 ||| |||| || | ||| |||| ||||||||| ||| || | ||||| || | Sbjct 12383 CAATCGGGTGAAATGCGCGAGAAAACCGAATGGCATCGAGTGGTAATTTTCGGCAAGTTA 12442 Query 21243 GCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAACTT 21302 |||||| |||| | || ||| | |||||| ||||| ||||||||||| || Sbjct 12443 GCTGAAGTTGCAGGCGAATATCTGAAAAAAGGAAGCCAGGTATACATCGAAGGCTCTCTG 12502 Query 21303 AAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATCGTC 21362 |||| ||||| ||| ||| | |||| ||| || ||||| |||||| | | || Sbjct 12503 CAAACGCGTAAATGGCAAGACCAAAGCGGTCAAGACCGATACACAACGGAAGTGGTAGTA 12562 Query 21363 AGCCAGGGCGGCACCATGCAAATG 21386 | ||||| | ||||||||| Sbjct 12563 AATATCGGCGGGTCAATGCAAATG 12586 >seq2599 Length=15424 Score = 102 bits (112), Expect = 5e-17 Identities = 185/271 (68%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 21047 ATAAGTGGCACAACGCGGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCC 21106 |||| ||||||||||||| || |||| | || ||| | ||| | | || |||||||| Sbjct 362 ATAAATGGCACAACGCGGCGTTAACAGATGTATTCTGGTCGGTCACTTAGGTCAAGACCC 303 Query 21107 GGAGATCAGGTATATACCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGA 21166 ||| | | || ||| ||||| ||||| ||| | ||| | || || ||| Sbjct 302 GGAAGTACGTTACTCACCCAATGGTGGCGCAGTCACCAATATCACACTGGCTACCTCTGA 243 Query 21167 ATCATGGCGCGACAAGCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGT 21226 | ||||| ||||||||| | || | | || || ||||||||||||| || || Sbjct 242 AGCATGGAAAGACAAGCAATCAGGTGAGCTGAGGGAAAAAACAGAATGGCACCGTGTGGT 183 Query 21227 TTTGTTCGGAAAACTTGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTA 21286 | ||||||||||||| || ||| |||| |||| ||| | | ||||| ||| | || Sbjct 182 TCTGTTCGGAAAACTGGCAGAAGTTGCCGGTGAATATCTGAGGAAAGGCAGCCAGATTTA 123 Query 21287 CATCGAAGGGAAACTTAAAACCCGTAAGTGG 21317 || || || || | |||| || |||||| Sbjct 122 TATTGAGGGTCAATTGCAAACACGCAAGTGG 92 Score = 96.9 bits (106), Expect = 2e-15 Identities = 221/330 (67%), Gaps = 2/330 (1%) Strand=Plus/Plus Query 66011 AATCCCATTGAATTAACGCTGACCGACTGGGTACGTGATGGT-AGTGCTCCACAGGGATT 66069 ||||| |||||||| || || |||||||||||| | | ||| | | || ||||| | Sbjct 8557 AATCCGATTGAATTGACACTCACCGACTGGGTAAGCAACGGTGAATTACCCGCAGGGCTG 8616 Query 66070 TCAAATGGGGGATGCGGCAGAACTTAAGGCAGTGCTTGAGGATGGCGGTATTGCCCGAGT 66129 || | ||||| |||||||| || || ||||| || | ||||| || ||| Sbjct 8617 GCAT-TACAGGATGAAGCAGAACTGAAAGCCGTGCTGGAAGCAGGCGGCCTTATCCGCTG 8675 Query 66130 GAAAAAGCAGGATTTGGGAAGCGATGAAATTTCCACACACCTGGAAGCTGGCAAGCTCGT 66189 || ||||||||||| ||||||||| |||| || | ||| | || ||| ||| Sbjct 8676 CAAGCAGCAGGATTTGTTTTCAGATGAAATTGCCACGCATATTGAATCCGGTAAGTACGT 8735 Query 66190 TACTAAGTTGGCACTCGACTGGCAGAAACGCATTAAATTTACACTGGACCATAACTTCAG 66249 || ||||||||||| || ||| | |||| ||| | || || | | || | ||| Sbjct 8736 GACCAAGTTGGCACTGGAGTGGGAAGAACGTATTCAGTTCACGTTATCCGATGATTTCGC 8795 Query 66250 CCTTACCAGCGTCAAATTTGCGGATGAATTGCTTGAGCAGAACTCTGATATTGATAGTGA 66309 | | | | ||| || || | |||| || |||||| ||||||||| |||| Sbjct 8796 CATCAAGAAAATCAGGTTCAGTGACGCATTGAAAGAACAGAACGACGATATTGATCGTGA 8855 Query 66310 AGATGTTGCGCAGCGACTGGACGCAGATTT 66339 |||| | || ||||| | || || ||||| Sbjct 8856 AGATTTCGCCCAGCGTTTTGATGCTGATTT 8885 >seq2557 Length=24734 Score = 102 bits (112), Expect = 5e-17 Identities = 247/367 (67%), Gaps = 18/367 (5%) Strand=Plus/Minus Query 31665 AATAGGCTATGTACGCGTATCAACAAATGAACAAAACACTGCTTTACAACGAAACGCTCT 31724 ||| |||||| | | |||||||||| ||| || || | || ||| ||| |||| || | Sbjct 21621 AATTGGCTATATCAGAGTATCAACAAGTGATCAGAATAGTGATTTGCAAAGAAATGCA-T 21563 Query 31725 TGAAAGCGCAGGA-TGTGAGCTAATTTTTGAGGACAAGGCGAGCGGCAAAAAGGCTGAGC 31783 ||| | | ||||| | |||||||| ||||| || || | || || | | Sbjct 21562 TGACCGATATTCACTGTGAAATGATTTTTGAAGACAAAATCAGTGGGAGAACAGCCAATC 21503 Query 31784 GCCCTGGGTTAAAAAAGGTACTCCGT--ATGCTTTCCAGA-----GGTGATACCCTGGTC 31836 |||| || |||||| | ||| | || || || || ||||| ||||| Sbjct 21502 GCCCAGGATTAAAACGTG-----CGTTAAAGCA--CCTGAAATTTGGCGATACACTGGTT 21450 Query 31837 GTATGGAAGTTAGACCGTCTTGGGCGCAGCATGCGTCACTTAGTTGTGCTGGTGGAAGAG 31896 || |||||||| || ||||| |||||||| | | | || || | ||| Sbjct 21449 GTCTGGAAGTTGGATCGTCTGGGGCGCAGTGTAAAAAATCTGGTGACACTAATTTCAGAA 21390 Query 31897 CTGCGTGA-CAGAGGCATTAACTTCCGGAGTCTCACTGACTCCATCGACACCAGTACACC 31955 |||| ||| ||| || ||| | |||| ||| || || ||| || || |||||||| | Sbjct 21389 CTGCATGAACAG-GGAATTCATTTCCAGAGCCTGACGGACAGTATTGATACCAGTACCGC 21331 Query 31956 AATGGGGCGCTTTTTCTTTCACGTAATGGGGGCGCTGGCAGAAATGGAACGTGAGCTTAT 32015 |||||||| |||||||| || || ||| | || ||||| ||||||||||| ||| | || Sbjct 21330 TATGGGGCGGTTTTTCTTCCATGTGATGAGCGCACTGGCCGAAATGGAACGCGAGTTGAT 21271 Query 32016 CGTTGAA 32022 ||| ||| Sbjct 21270 CGTCGAA 21264 >seq2600 Length=29343 Score = 100 bits (110), Expect = 2e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 70933 GGCCCTTTAGCTCAGT-GGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAG 70991 ||||| |||||||||| ||||||||| | ||||||||||||| |||||| |||||||| Sbjct 1 GGCCCCTTAGCTCAGTTGGTTAGAGCAGTCGACTCATAATCGATTGGTCACTGGTTCAAG 60 Query 70992 TCCGGTAGGGGCCACCATATTT 71013 ||| ||||||||||||| |||| Sbjct 61 TCCAGTAGGGGCCACCAAATTT 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303224615575344