Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq348 143 7e-30 >seq348 Length=55286 Score = 143 bits (158), Expect = 7e-30 Identities = 241/346 (70%), Gaps = 2/346 (1%) Strand=Plus/Minus Query 32116 AGGCGTAGTCCAGCGCTTCCACGTCAGTTTGTACAAGGTCGATCCAGTCGTCGACAGC-G 32174 |||||||||| | |||||| ||||| || ||||| ||||| | | || | | Sbjct 41253 AGGCGTAGTCGATTCCTTCCAGGTCAGCAGACACTCCGTCGAGCCAGTTCTTGCCAACCG 41194 Query 32175 CTGCTCGCAACCTGTTCTCCAAACACCACTGCAGGTCGGCGCTCAGCGATGAGCCAGTGC 32234 | || ||||||||||||||| | || || || || || || || |||||| | | Sbjct 41193 CCGC-CGCAACCTGTTCTCCCATGACGACAGCGGGCCGTCGGGCACGGATGAGGCGAAGG 41135 Query 32235 CAGTGCGGCCAGAGGTGCCGCTCGTCATCAAACCCGCCACCTTTGCCTGCCGCGGAGAAA 32294 |||| ||||| |||||||| |||||||| | || || || || | ||||| Sbjct 41134 AAGTGGGGCCACAGGTGCCGATCGTCATCCTGGGCTTTTCCCTTACCCGCGACTGAGAAC 41075 Query 32295 GGTTGGCACGGGCATGATCCGGTCCACACGGGGCGATCGTCGGGCCAGCCGGCGCGCCGC 32354 || ||||||||| || ||||||| ||| |||||||||||||| || | || Sbjct 41074 GGCTGGCACGGGGCGCTGCCCGTCCACAGCTCGCGGTCGTCGGGCCAGCCAGCAAGTCGA 41015 Query 32355 AGTGCGTAGGACCACACGCCGATGCCGGCGAAGAAATGGCACTGGCTGTATCCGCGCAGG 32414 ||| |||||| || |||||||||||||||| ||||| || | ||||||| ||| Sbjct 41014 GCTGCAAGGGACCAGCCGGCGATGCCGGCGAAGAAGTGGCATTGCCGGTATCCGGCGAGG 40955 Query 32415 TCATCAGGTTGGACATCCTCGATACTCCTTTCGTCGACGTGGCCGG 32460 || ||||| ||||| ||| ||||| |||||| ||||||| Sbjct 40954 TCTGAGGGTTGAACATCGGTGATGCTCCTGGTGTCGACATGGCCGG 40909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135601788026336