Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2162 134 1e-26 seq2252 122 8e-23 seq1739 93.3 4e-14 >seq2162 Length=74254 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | || | |||||||| | || ||||||||||| | |||||| || ||| Sbjct 49097 CCTCCTCGAAGACGGAGGACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTC 49038 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | |||||| || || || || ||||||| |||| ||||||||||| || Sbjct 49037 AAAGTGCGGCCATCCTCAAGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGG 48978 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | ||| || || |||||| ||| | |||| | ||||| Sbjct 48977 ATTCCTTCTTTGTCTTGAATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGACT 48918 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| ||||| || || || || ||||| || |||||||| Sbjct 48917 TCCAATGTGATCGTTTTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 48871 Score = 129 bits (142), Expect = 5e-25 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || |||||||| | || | || | ||| | ||| || ||||| || | | Sbjct 48881 AAAATCTGCATTCCTCCTCGGAGGCGAAGAACAAGGTGGAGAGTGGACTCCTTCTGGATG 48822 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||| ||||||| ||| | ||||||||| || |||||| | ||||| | | ||| Sbjct 48821 TTATAGTCGCTCAAGGTGCGGCCATCCTCCAGTTGCTTTCCGGCGAAGATAAGACGTTGT 48762 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| ||||| ||||||||||| | ||| || || || ||| ||| | |||| Sbjct 48761 TGATCTGGGGGAATTCCTTCTTTGTCTTGAATCTTAGCTTTCACGTTCTCGATGGAGTCA 48702 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||| ||||| || | |||||||| ||||||||||| Sbjct 48701 GATCCTTCAACCTCGAGAGTGATGGTCTTTCCTGTCAACGTTTTCACGAAGATCTGCAT 48643 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||||| | ||| | || | ||| | ||| || ||||| || | ||| || || Sbjct 49329 CATTCCTCCTCGAAGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 49270 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 |||| |||| | ||| |||| ||| || || ||||||| | | ||||| || || Sbjct 49269 ACTCAAAGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGG 49210 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 |||||| ||||| ||||| | || || || || ||| | | ||||||| || Sbjct 49209 AGGAATTCCTTCCTTGTCTTGGATCTTAGCTTTCACGTTTTCAATGGTGTCAGAACCCTC 49150 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| |||| ||||| ||||| || || ||||| || |||||||||||||| Sbjct 49149 GACCTCAAGAGTGATCGTTTTGCCTGTCAGAGTCTTGACAAAGATCTGCAT 49099 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 94814 GATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCA 94873 || ||||| || | ||| || || |||| |||| | ||| |||| ||| |||||| | Sbjct 49651 GACTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGCTTTCCGGCG 49592 Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| | | ||| |||||||| ||||| ||||| ||||| | || || ||||| || Sbjct 49591 AAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTCACA 49532 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| | || | || || || | |||||||| ||||| || | |||||| Sbjct 49531 TTCTCGATCGAATCGGATCCTTCAACCTCGAGAGTGATGGTCTTTCCGGTCAACGTTTTC 49472 Query 94994 ACAAAGATCTGCAT 95007 || ||||||||||| Sbjct 49471 ACGAAGATCTGCAT 49458 >seq2252 Length=1130325 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 ||||||||||| || | ||| || ||| || |||| | |||||| ||||| |||||| Sbjct 563542 GTAGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCG 563601 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||| ||||| ||||| || || ||||| | || || |||||| Sbjct 563602 GCGAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTG 563661 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||||| | ||||| || | |||||||| ||||| || | ||| Sbjct 563662 ACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTC 563721 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| ||||| ||||| Sbjct 563722 TTCACGAAGATTTGCAT 563738 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| || ||| || |||| | |||||| ||||| |||||| Sbjct 562230 GTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCG 562289 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||| ||||| || || || || || || | || ||||||||| Sbjct 562290 GCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTTGCCTTG 562349 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | ||||| | ||||| || | |||||||| ||||| || | |||| Sbjct 562350 ACGTTCTCAATGGTGTCCGAACCCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTT 562409 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| ||||||||||| Sbjct 562410 TTCACGAAGATCTGCAT 562426 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 |||||||| || || | ||| || ||| || || | |||||| ||||| |||||| Sbjct 562733 GTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTCCTTCCATCCTCGAGCTGCTTTCCG 562792 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| || | ||||||||||| || || || ||||| || | ||| ||||||||| Sbjct 562793 GCGAAGATCAAGCGCTGCTGATCTGGGGGGATTCCCTCTTTATCTTGAATCTTTGCCTTG 562852 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | ||||| | || || |||| |||||||| ||||| || | ||| Sbjct 562853 ACGTTTTCAATGGTGTCCGAACCCTCAACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTC 562912 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| || || ||||| Sbjct 562913 TTCACGAAAATTTGCAT 562929 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| ||||||| | | |||||| ||||| ||||| ||||||||||| | || || Sbjct 562559 TTACCGGCAAAGATGAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 562618 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| || ||| ||||| | | ||||| || | |||||||| || ||||| Sbjct 562619 GCCTTCACATTCTCGATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTGCCAGTG 562678 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| ||||| Sbjct 562679 AGGGTCTTGACGAAGATTTGCAT 562701 >seq1739 Length=92152 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/147 (76%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| ||||||| | | ||||||||||||||| || ||||| ||||| | || || Sbjct 76220 TTACCGGCAAAGATGAGCCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTC 76161 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTTTTTCCAG 94982 |||||||| ||| ||||| || ||| ||||| || | |||||||| || || | Sbjct 76160 GCCTTGACATTCTCGATCGTGTC-GC-TGGCTTCGACCTCCAGGGTGATGGTCTTGCCGG 76103 Query 94983 TAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || ||||| ||||||||||||| Sbjct 76102 TGAGCGTCTTCACGAAGATCTGCATGC 76076 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| ||||||| | | || || || |||||||| ||||||||||| | ||| || Sbjct 76496 TTACCGGCAAAGATCAGGCGCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATCTTC 76437 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||||||| | | |||||| | ||||| || | |||||||| || || || Sbjct 76436 GCCTTGACGTTTTCAATTGTGTCACTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGTG 76377 Query 94985 AGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| ||||||||||||| Sbjct 76376 AGCGTCTTCACGAAGATCTGCATGC 76352 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| ||||||| | | |||||| |||||||| || ||||| ||||| | ||||| Sbjct 75946 TTACCGGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTG 75887 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||||||| | | ||||| || || ||||| || | ||||| || || || || Sbjct 75886 GCCTTGACGTTCTCAATGGTGTC-GCTTGCCTCGACCTCCAGAGTGATCGTCTTGCCGGT 75828 Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| ||||||||||||| Sbjct 75827 GAGCGTCTTCACGAAGATCTGCATGC 75802 Score = 86.0 bits (94), Expect = 6e-12 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| ||||||| | | ||||| |||||||| || ||||| ||||| | ||| || Sbjct 75670 TTACCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGAATCTTG 75611 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTTTTTCCAG 94982 |||||||| ||| ||||| || ||| ||||| || | |||||||| || |||| Sbjct 75610 GCCTTGACATTCTCGATTGTGTC-GC-TGGCTTCGACCTCCAGGGTGATGGTCTTGCCAG 75553 Query 94983 TAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || ||||||||||| Sbjct 75552 TCAGCGTCTTGACGAAGATCTGCAT 75528 Score = 86.0 bits (94), Expect = 6e-12 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| ||||||| | | ||||||||||||||| || ||||| ||||| | || || Sbjct 76770 TTACCGGCAAAGATGAGGCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTC 76711 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTTTTTCCAG 94982 |||||||| ||| ||||| || ||| ||||| || | |||||||| || || | Sbjct 76710 GCCTTGACATTCTCGATCGTGTC-GC-TGGCTTCGACCTCCAGGGTGATGGTCTTGCCGG 76653 Query 94983 TAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || || || |||||||| Sbjct 76652 TGAGAGTCTTGACGAAAATCTGCAT 76628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448275151175040