Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1917 159 5e-35 seq2410 158 2e-34 seq1035 154 2e-33 seq2139 150 3e-32 seq736 141 1e-29 seq519 138 2e-28 seq157 120 5e-23 >seq1917 Length=98119 Score = 159 bits (176), Expect = 5e-35 Identities = 181/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || || |||||||| || ||||||||||| || || Sbjct 80089 CGCCAAGCGCCATCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCGAT 80030 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || || ||||| ||||| ||||| |||| ||| | |||| ||||||| Sbjct 80029 CCGCCGTCTCGCCCGCCGTGGAGGAGTGAAGCGCATCTCCGGACTCATCTACGAAGAGAC 79970 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| |||||||| || || |||| ||| || || ||| ||| Sbjct 79969 CCGCGGAGTCCTGAAGGTCTTCCTCGAGGGAGTCATCCGTGACGCCGTCACCTACTGCGA 79910 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| ||||||| || | || || ||||| Sbjct 79909 GCACGCCAAGCGAAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAAGG 79850 Query 16672 CCG 16674 ||| Sbjct 79849 CCG 79847 >seq2410 Length=40269 Score = 158 bits (174), Expect = 2e-34 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || || |||||||| |||||||| ||||| || || Sbjct 12349 CGCCAAGCGCCATCGCAAGGTGCTCCGCGACAACATCCAGGGAATCACGAAGCCGGCCAT 12408 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || ||||||||||||||||| |||| ||| | |||| ||||||| Sbjct 12409 CCGCCGCCTCGCCCGCCGTGGTGGAGTCAAGCGCATCTCCGGACTCATCTACGAAGAGAC 12468 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| |||||||| | || |||| ||| || || |||| ||| Sbjct 12469 TCGCGGAGTCCTGAAGGTCTTCCTCGAAGGAGTCATCCGTGACGCCGTCACCTATTGCGA 12528 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| || || ||||| |||||| ||||||| ||||||| || Sbjct 12529 GCACGCCAAGCGAAAGACCGTCACCGCCATGGACGTCGTCTACGC 12573 >seq1035 Length=96219 Score = 154 bits (170), Expect = 2e-33 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || || |||||||| |||||||| ||||| || || Sbjct 87376 CGCCAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGAATCACGAAGCCGGCCAT 87317 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || |||||||||||||||||||| |||| || | |||| || |||| Sbjct 87316 CCGCCGCCTCGCCCGTCGTGGTGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 87257 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| |||||||| || || |||| ||| || || ||| ||| Sbjct 87256 CCGCGGAGTGCTGAAGGTCTTCCTCGAGGGAGTCATCCGTGACGCCGTCACCTACTGCGA 87197 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| ||||||| || | || || ||||| Sbjct 87196 GCACGCCAAGCGAAAGACCGTCACCGCCATGGACGTCGTCTACGCTCTCAAGCGCCAAGG 87137 >seq2139 Length=34178 Score = 150 bits (166), Expect = 3e-32 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || |||||||||||||| || ||||| ||||| || || || || ||||| |||||||| Sbjct 728 CTCCGAGATAACATCCAGGGCATCACGAAGCCCGCGATTCGGCGCCTGGCGCGTCGTGGC 787 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| ||| || |||| ||||| | || | || ||||| |||| Sbjct 788 GGCGTGAAGCGTATCTCCGGACTGATCTACGAAGAAACCCGCGGAGTGCTGAAGGCCTTC 847 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| || || |||| ||||| || ||| ||||||||| || || ||||| ||| Sbjct 848 CTCGAGGGAGTCATCCGCGATGCCGTCACCTACTGCGAGCACGCGAAGCGCAAGACCGTC 907 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| |||| || || |||| || |||||||| Sbjct 908 ACCGCCATGGACGTCGTGTACGCCCTGAAGCGCCAAGGCCG 948 >seq736 Length=112280 Score = 141 bits (156), Expect = 1e-29 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| ||| || || |||||||| ||||| || ||||| || || Sbjct 893 CGCCAAGCGCCATCGCAAGGTTCTCCGTGACAACATCCAGGGAATTACGAAGCCCGCCAT 834 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || ||||| || |||||||| |||| || | ||||||| |||| Sbjct 833 CCGGCGCCTCGCCCGACGTGGAGGCGTCAAGCGCATCTCCGGTCTCATCTATGAGGAGAC 774 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| || ||| |||| || ||| || ||| ||| Sbjct 773 CCGCGGAGTCCTCAAGGTCTTCCTGGAGGGCGTCATCCGCGACGCTGTCACCTACTGCGA 714 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||||||||| |||||| | ||||| | ||||| || | || || ||||| Sbjct 713 GCACGCCAAACGTAAGACCGTCACCGCTATGGACGTTGTCTACGCTCTCAAGCGCCAAGG 654 Query 16672 C 16672 | Sbjct 653 C 653 >seq519 Length=357675 Score = 138 bits (152), Expect = 2e-28 Identities = 195/273 (71%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||||| || || || |||||||| || ||||||||||| || || Sbjct 236378 CGCTAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 236437 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || ||||| || || |||||||| |||| || | |||| ||||||| Sbjct 236438 CCGCCGCCTTGCCCGTCGCGGAGGCGTCAAGCGCATCTCGGGTCTCATCTACGAAGAGAC 236497 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||| || |||| ||| ||| || | ||| ||| Sbjct 236498 CCGAGGTGTGCTCAAGTCGTTCCTGGAGGCCGTCGTCCGTGACGCAGTTACCTACTGCGA 236557 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| | ||||| ||||||| | | || |||||||| Sbjct 236558 GCACGCCAAGCGCAAGACCGTCACCGCGATGGACGTCGTCTACTCCCTCAAGCGTCAAGG 236617 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 ||| | | || || || ||| | ||| |||| Sbjct 236618 CCGCACCCTCTACGGATTCGGAGGATAA-CTTC 236649 >seq157 Length=7394 Score = 120 bits (132), Expect = 5e-23 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || || || ||||||||||||||||| |||| ||| | |||| ||||||| || | Sbjct 2 CTCGCCCGCCGTGGTGGAGTCAAGCGCATCTCCGGACTCATCTACGAAGAGACCCGCGGA 61 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCT 16618 || ||||| |||||||| || || |||| ||| || || ||| ||||||||| Sbjct 62 GTCCTGAAGGTCTTCCTCGAGGGAGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCC 121 Query 16619 AAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAG 16678 || || ||||| |||||| ||||||| ||||||| || | || || |||||||||| Sbjct 122 AAGCGAAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAAGGCCGTACC 181 Query 16679 ATTTATGGTTTTGGAAGTTAATCTTC 16704 | || || || || | ||| |||| Sbjct 182 CTCTACGGATTCGGCGGATAAGCTTC 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072581424752