Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq2685 118 2e-21 >seq2685 Length=29636 Score = 118 bits (130), Expect = 2e-21 Identities = 278/413 (67%), Gaps = 10/413 (2%) Strand=Plus/Minus Query 156661 GCATTATTAAGTGTATCCAATAAAACTGGTATTGTAGATTTTGCAAGATCTCTAGTTGAT 156720 ||| | |||||||| || ||||| | |||||| |||| ||||| | | | || ||||| Sbjct 29253 GCACTTTTAAGTGTGTCTGATAAAGCAGGTATTTTAGAATTTGCTAAAGCACTTGTTGA- 29195 Query 156721 TATGGATA-TACTA-TCATTTCTAGTGGTGGAACACATTCTGTAATAGCAGCAGAAGGAA 156778 | | | | || | || | |||| |||||||| | || |||||| || || Sbjct 29194 -AAGAAAAGTAGAACTCTTATCTACAGGTGGAACCGCACGTCTATTAGCAGAAGCTGGCT 29136 Query 156779 TACCTGTAACTAAGGTTTCTGATTATACTGGATCACCAGAGATTCTTAATGGAAGAGTGA 156838 |||| || | | | || || || || || || | ||||| || | |||| ||||||| Sbjct 29135 TACCGGTTATTGAAGTCTCCGACTACACAGGCTTTCCAGAAATGATGGATGGCAGAGTGA 29076 Query 156839 AGACATTACATCCAAAGATTCATGGTGGTATTCTTGCACAGCGTGGTAATCCTGTACATG 156898 | ||| | ||||| || | |||||||| || || | | ||||| | || ||| Sbjct 29075 AAACACTGCATCCTAAAGTACATGGTGGGATCCTAGGTCGTCGTGGACAAGATG---ATG 29019 Query 156899 ATATGGATCGTAATGCAAATGATATTGGATTGATTGATATTGTTGCAGTAAACTTATATC 156958 || || | | | | |||| ||| | || ||||| || | ||||| | |||| Sbjct 29018 CAATT-ATGGAA--GAACATGAAATTCGTCCTATCGATATGGTCGTCGTAAATCTTTATC 28962 Query 156959 CTTTCGCAGAAACAGTTGCTAAACCAGATGTAACTCTTGCAGATGCAATAGAGAATATTG 157018 |||| || ||||||| ||| | |||||| | | |||||||| | |||||||| | Sbjct 28961 CTTTTGCTAAAACAGTAGCTCATCCAGATTGTTCATTAGCAGATGCTGTGGAGAATATCG 28902 Query 157019 ATATTGGTGGTCCTAGTATGGTGAGATCAGCAGCAAAGAATTATAAGGATGTT 157071 |||||||||| || | ||||| | || || ||||| ||| |||| || ||| Sbjct 28901 ATATTGGTGGACCAACAATGGTTCGCTCCGCGGCAAAAAATCATAAAGACGTT 28849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807526289523840