Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4 109 7e-19 >seq4 Length=195412 Score = 109 bits (120), Expect = 7e-19 Identities = 292/443 (66%), Gaps = 5/443 (1%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 |||| | || || || || | ||| || || || || | ||| ||||||||| Sbjct 71386 ACATGAGGCAGGCAAAGTCACGGTGAAGGCCTTCATCGCGGGAAATCAGTTCGTTGCTGT 71327 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 |||||||| ||||| ||||| ||||| || |||||||| |||| |||||| || |||| Sbjct 71326 GAGTGAGTCCAGGCATGAGGCCTCGCTTCTTGAGCCAAAAGATGGCAGCGAACGACCCAG 71267 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGC 33472 | |||||||||||||| || || || || || |||| | |||| || || Sbjct 71266 AGAAGAAGATTCCTTCAACGGCGGCGAACGCGATAACGCGAGTTCCAAATGAAGCGTTCT 71207 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 |||| ||||| ||||||| || |||||||| || | ||||| | | | | Sbjct 71206 TGTCGCCGATCCAGCGCAGAGCCCAGTCCGCCTTCTTCTTGATGCAAGGGAACTCGTGGA 71147 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 |||| || || ||| ||| || || ||| || |||| || |||| Sbjct 71146 TGGCGTTGAAAAGAACGTTGCGCTCCTTTGGATCGACGACGTAAGCTTCAATCATCTTGG 71087 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 ||||| ||||| || ||| ||| | ||||||||| || | |||||| | || | Sbjct 71086 AGTACATCTCCGAGTGGATGCCTTCGACGGCCATCTGGAAGCTGTAGAAGGACAAGGCTT 71027 Query 33653 CGGTAATC-TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 | | ||| || || ||| ||| || || | | |||||||| || ||||| || Sbjct 71026 CTGGCATCTTGACCTCCTGGGTGAAA-CGCTCGACGAGGTTTTCATTGACGATTCCATCG 70968 Query 33712 CTGGCTGCAAAAAACGCCAATAC 33734 ||| ||||| || ||||| || Sbjct 70967 GAGGCGGCAAAGAAAGCCAAAAC 70945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622924898490240