Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2162 118 1e-21 seq2252 102 8e-17 >seq2162 Length=74254 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || ||||| || || ||||| | ||||| |||| | ||| | Sbjct 48642 AATGCAGATCTTCGTGAAAACGTTGACAGGAAAGACCATCACTCTCGAGGTTGAAGGATC 48701 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| |||||||| | || ||| |||||| ||||||||||| || || || ||||| Sbjct 48702 TGACTCCATCGAGAACGTGAAAGCTAAGATTCAAGACAAAGAAGGAATTCCCCCAGATCA 48761 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||| | || || | || ||| || ||||| || |||| | | | | ||||||||||| Sbjct 48762 ACAACGTCTTATCTTCGCCGGAAAGCAACTGGAGGATGGCCGCACCTTGAGCGACTATAA 48821 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| || || || || ||| |||| || || || | || ||||||||| Sbjct 48822 CATCCAGAAGGAGTCCACTCTCCACCTTGTTCTTCGCCTCCGAGGAGGAA 48871 >seq2252 Length=1130325 Score = 102 bits (112), Expect = 8e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 26760 TCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTA 26819 |||| | | |||||| | || || || || | || ||||| | |||||| |||| | Sbjct 563975 TCAATCGACATGCAAATCTTCGTCAAGACCCTCACGGGAAAGACCATCACCCTCGAGGTC 563916 Query 26820 GAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCT 26879 ||| | ||||| ||||| | ||||| ||||| ||||| || || || ||| Sbjct 563915 GAAGCCTCTGACACTATCGAAAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCT 563856 Query 26880 CCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC 26939 |||||||| || | || || | || ||| || || ||||| |||| | | | | ||||| Sbjct 563855 CCCGATCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCAGC 563796 Query 26940 GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||| || || ||||| || | ||||| ||||| Sbjct 563795 GACTACAACATCCAGAAGGAATCGACCCTTCATCTAGTCCT 563755 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || || || || ||||| | ||||| | ||| | || Sbjct 562930 AATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTTGAGGGTTC 562871 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| || | ||||| ||||||| || ||||| || || || || ||||| Sbjct 562870 GGACACCATTGAAAACGTCAAGGCAAAGATTCAAGATAAAGAGGGAATCCCCCCAGATCA 562811 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | | || | || ||| || || ||||| |||| || | | | |||||| || Sbjct 562810 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGGACCCTGTCCGACTACAA 562751 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| || ||||||||||| |||||||||| || | ||| | || |||| Sbjct 562750 CATCCAGAAAGAATCTACGCTCCATCTGGTTCTCCGCCTTCGCGGTGGAA 562701 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || || || ||||| | |||||| |||| | ||| | Sbjct 563738 ATGCAAATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 563679 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| ||||| ||||| || || || || || || || Sbjct 563678 GACACCATCGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAG 563619 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || ||| || || ||||| |||| | | | |||||| ||| Sbjct 563618 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAAC 563559 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || || |||||||| |||||||||| || | ||| | || |||| Sbjct 563558 ATCCAGAAGGAATCTACGCTCCATCTGGTTCTCCGCCTTCGCGGTGGAA 563510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478645263886080