Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1889 123 6e-23 seq416 86.0 2e-11 >seq1889 Length=309471 Score = 123 bits (136), Expect = 6e-23 Identities = 244/358 (68%), Gaps = 5/358 (1%) Strand=Plus/Minus Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200 || ||||| || || ||||| || || ||| | ||||| || | |||||||||||||| Sbjct 14749 TCCCAGATCGAAACTGGAACTCCTTACATGCTCTACAAGGACGCCTGCAACCGCAAGTCG 14690 Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATAC 364260 ||||||||| |||| || || || || |||||| || || ||||| | | ||| Sbjct 14689 AACCAGCAGAACCTGGGAACGATCAAGTGCTCCAACCTGTGCACTGAGATCGTCCAGTAC 14630 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCG-TTTGT 364319 | |||||||||| ||||| || ||| | || ||||| ||| || || || || Sbjct 14629 TCGTCTCCCGACGAAGTCGCCGTGTGCAACTTAGCTTCGATTGCG-TTGAACCGATTCGT 14571 Query 364320 AAAAGATG---GTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG 364376 || || | || || ||| || || | || | | | || | | ||| | Sbjct 14570 CAAGGAGGACAAGACCTTCGACTACGAGAAGCTCCACGCGATCACTAAGGTCGTCACTCG 14511 Query 364377 CAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAA 364436 ||| ||| ||||| | |||||| || |||||||| ||||||||||||| || || Sbjct 14510 CAACCTCAACAAGATCATCGACGGCAACTATTATCCTGTTCCTGAAGCCGAAACCTCCAA 14451 Query 364437 TATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATG 364494 | ||| || || || ||||| | || || ||||| ||||| |||| |||||| || Sbjct 14450 CAAGCGGCACCGTCCCATTGGAATCGGAGTCCAGGGACTCGCGGACGCCTTTATGCTG 14393 >seq416 Length=5154 Score = 86.0 bits (94), Expect = 2e-11 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 111345 TGGAAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAA 111404 |||| ||||||||||||||||| | ||||| || |||| || || ||||| | Sbjct 2274 TGGAGAGGAATTGTCGAAGAACTCATTTGGTTCATCCGCGCGGACACGAACGCAAAGAAC 2333 Query 111405 CTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCA 111464 || || || ||| || || ||||||||| || ||||| |||| |||||| || | Sbjct 2334 CTGGCCGCGAAAGGCGTCAAGATTTGGGATCCGAACGGATCTCGTGCCTTTCTGGA-CAA 2392 Query 111465 GTTGGTCTTGTC-GACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCA 111517 |||| || | || |||||| || ||||| ||||||||||| || ||||| Sbjct 2393 CTTGGGATTCACGGAACGCGAAGAGGGGGATCTTGGACCAGTTTATGGTTTTCA 2446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303305773439648