Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2252 116 3e-21 seq2162 96.9 3e-15 seq1739 87.8 2e-12 >seq2252 Length=1130325 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 23983 CAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 ||| | | |||||| | || || || || | || ||||| | || ||| |||| |||| Sbjct 563974 CAATCGACATGCAAATCTTCGTCAAGACCCTCACGGGAAAGACCATCACCCTCGAGGTCG 563915 Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 | ||| ||||| ||||| | ||||| ||||| ||||| || ||||| |||| Sbjct 563914 AAGCCTCTGACACTATCGAAAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTC 563855 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG 24162 ||||||| ||| | ||||| | || ||| ||||| ||||| |||| | | | |||||| Sbjct 563854 CCGATCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCAGCG 563795 Query 24163 ATTATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | || ||||| || || ||||| || ||||| |||| Sbjct 563794 ACTACAACATCCAGAAGGAATCGACCCTTCATCTAGT 563758 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || ||||| | || ||| |||| ||||| ||| Sbjct 563157 ATGCAAATCTTTGTCAAGACCCTCACGGGAAAGACTATCACCCTCGAGGTCGAAGCCTCT 563098 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || || || || || || || Sbjct 563097 GACACCATCGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAG 563038 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||| ||||| | ||||||| | | | | |||| || || ||| Sbjct 563037 CAGCGCTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCAGTGACTACAAC 562978 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| || |||| Sbjct 562977 ATCCAGAAGGAATCCACCCTTCA 562955 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || || ||||| | || ||| |||| ||||| ||| Sbjct 563738 ATGCAAATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 563679 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || || || || || || || Sbjct 563678 GACACCATCGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAG 563619 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||| ||||| ||||| |||| | | | | ||| || ||| Sbjct 563618 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAAC 563559 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || |||||||| Sbjct 563558 ATCCAGAAGGAATCTAC 563542 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || || || ||||| | || || | ||||| |||| Sbjct 562930 AATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTTGAGGGTTC 562871 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | ||||| ||||||| || ||||| || || || || ||||| Sbjct 562870 GGACACCATTGAAAACGTCAAGGCAAAGATTCAAGATAAAGAGGGAATCCCCCCAGATCA 562811 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || ||| ||||| ||||| |||| || | | | ||| || || Sbjct 562810 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGGACCCTGTCCGACTACAA 562751 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || ||||||||||| Sbjct 562750 CATCCAGAAAGAATCTAC 562733 >seq2162 Length=74254 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| || || ||||| | || || |||| || || | Sbjct 48642 AATGCAGATCTTCGTGAAAACGTTGACAGGAAAGACCATCACTCTCGAGGTTGAAGGATC 48701 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| |||||||| | || ||| |||||| ||||||||||| || || || ||||| Sbjct 48702 TGACTCCATCGAGAACGTGAAAGCTAAGATTCAAGACAAAGAAGGAATTCCCCCAGATCA 48761 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || ||| |||||||| || |||| | | | | | ||||| ||||| Sbjct 48762 ACAACGTCTTATCTTCGCCGGAAAGCAACTGGAGGATGGCCGCACCTTGAGCGACTATAA 48821 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || || || Sbjct 48822 CATCCAGAAGGAGTCCAC 48839 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || ||| |||| || | |||||||||| | Sbjct 48870 AATGCAGATTTTCGTGAAGACCCTCACGGGCAAAACGATCACATTGGAAGTCGAGGGCTC 48929 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || | ||||| | |||||| |||||| ||||||||||| || || || ||||| Sbjct 48930 TGATTCGATCGAAAACGTCAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGATCA 48989 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || |||| | | || |||||||| || |||| | | | | || || ||||| Sbjct 48990 GCAGCGATTGATCTTTGCTGGGAAGCAACTTGAGGATGGCCGCACTTTGAGTGACTATAA 49049 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| ||||| ||||| || |||| || || Sbjct 49050 CATCCAAAAGGAATCGACGCTTCACTTGGT 49079 >seq1739 Length=92152 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | || || ||||| | || || || | || ||| | || |||||||| Sbjct 75249 CAACATGCAAATCTTCGTCAAAACCCTTACGGGGAAGACCATCACCCTGGAGGTCGAGGC 75308 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 75309 CAGCGACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCAGA 75368 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAG 24134 |||||| | ||||||| || || ||| Sbjct 75369 CCAACAGCGTCTGATTTTCGCTGGTAAG 75396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429920993083920