Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2252 113 4e-20 seq2162 107 2e-18 seq2318 86.0 6e-12 seq1859 84.2 2e-11 seq1739 84.2 2e-11 >seq2252 Length=1130325 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | |||||| ||||| || |||||||| ||| | Sbjct 563159 CCACCACGGAGACGAAGGACGAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAC 563218 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | |||||| || ||| |||| || ||||||||||| || || Sbjct 563219 AAAGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 563278 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||||||||| || ||| || ||| | | || | |||||| | ||||| Sbjct 563279 ATTCCTTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATAGTATCAGATCCCTCGACC 563338 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| | ||| || ||||| || ||||| Sbjct 563339 TCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563385 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | || || || | ||| | || || ||||| || |||||||| ||| | Sbjct 563512 CCACCGCGAAGGCGGAGAACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAC 563571 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || ||| |||| | ||||||||||| || || Sbjct 563572 AAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGA 563631 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | ||| | || || | || |||| Sbjct 563632 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACC 563691 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| | ||| || ||||| || ||||| Sbjct 563692 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563738 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || || || | || | ||| || ||||| || |||||||| ||| Sbjct 562199 GCCACCACGGAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 562258 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| |||||||| || ||| |||| | ||||||||||| || || Sbjct 562259 CAAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGG 562318 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || || || ||| || ||||| | ||| | || || | ||||| Sbjct 562319 GATGCCCTCCTTATCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCCGAACCCTCGAC 562378 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| | |||||| ||||| |||||||| Sbjct 562379 CTCCAGGGTGATGGTCTTTCCGGTCAAAGTTTTCACGAAGATCTGCAT 562426 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| || ||||| || |||||||| || || Sbjct 562931 CCACCACGGAGACGAAGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCACTG 562990 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | |||||| || ||| |||| || ||||||||||| || || Sbjct 562991 AGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 563050 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | ||| | || || | || |||| Sbjct 563051 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACC 563110 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || || || || || || || ||||| Sbjct 563111 TCGAGGGTGATAGTCTTTCCCGTGAGGGTCTTGACAAAGATTTGCAT 563157 >seq2162 Length=74254 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | ||||| |||||||| ||||| || || ||| Sbjct 49097 CCTCCTCGAAGACGGAGGACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTC 49038 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| || ||||| || || |||| || |||||||| || || ||| Sbjct 49037 AAAGTGCGGCCATCCTCAAGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGG 48978 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| | | || |||| | || | | ||| | | ||||| Sbjct 48977 ATTCCTTCTTTGTC-TTGAATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGAC 48919 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| || || || || || |||||||||||||| Sbjct 48918 TTCCAATGTGATCGTTTTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 48871 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| || |||| ||||| || || | ||||||||| Sbjct 49295 GTGGACTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGCTTGCCA 49236 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | ||||||||||| ||||| |||||||| ||||| ||| || || Sbjct 49235 GCAAAGATCAGCCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCTTGGATCTTAGCTTTC 49176 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | ||||| || | || | ||||| || || ||||| Sbjct 49175 ACGTTTTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATCGTTTTGCCTGTCAGAGTC 49116 Query 131218 TTTACGAAAATCTGCAT 131234 || || || |||||||| Sbjct 49115 TTGACAAAGATCTGCAT 49099 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || ||||| || ||||||| |||||| ||||| || ||||| || Sbjct 48839 GTGGACTCCTTCTGGATGTTATAGTCGCTCAAGGTGCGGCCATCCTCCAGTTGCTTTCCG 48780 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| |||| | ||| || || || || || |||||||||||||| Sbjct 48779 GCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCTTTGTC 48736 >seq2318 Length=474513 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 131091 CTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTT 131150 ||| || || |||| | ||||||||||| || |||||||| || || || ||| || Sbjct 465023 CTTACCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGGATCTT 464964 Query 131151 CTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 ||||| | ||| | || || | || ||||| |||| ||| | |||||| ||||| Sbjct 464963 GGCCTTGACATTCTCGATGGTGTCAGAGGCCTCGACCTCGAGGGTGATGGTTTTGCCGGT 464904 Query 131211 TAGAGTTTTTACGAAAATCTGCATG 131235 | ||| || ||||||||||||||| Sbjct 464903 CAAAGTCTTGACGAAAATCTGCATG 464879 >seq1859 Length=77309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 131091 CTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTT 131150 ||| |||||| |||| | ||||||||||| || ||||||||||| ||||| || || Sbjct 72681 CTTACCTGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCTTGAATCTT 72622 Query 131151 CTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 ||| | | ||| | || |||| || |||| |||| || | |||||||| || Sbjct 72621 GGCCTTCACGTTCTCGATCGTGTCGGAGGCTTCGACCTCGAGCGTGATCGTTTTACCCGT 72562 Query 131211 TAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| ||||| |||||||| Sbjct 72561 GAGGGTTTTGACGAAGATCTGCAT 72538 >seq1739 Length=92152 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 131091 CTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTT 131150 ||| || || |||| | || ||||| || |||||||| ||||| ||||| ||| || Sbjct 76771 CTTACCGGCAAAGATGAGGCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTT 76712 Query 131151 CTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 | ||||| | ||| | || ||| ||| |||| || | ||| | ||| || ||||| Sbjct 76711 CGCCTTGACATTCTCGATCGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGT 76652 Query 131211 TAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || |||||||||||||| Sbjct 76651 GAGAGTCTTGACGAAAATCTGCAT 76628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471995901941760