Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq788 199 3e-46 seq2162 107 1e-18 seq2741 96.9 2e-15 seq2252 87.8 1e-12 >seq788 Length=49189 Score = 199 bits (220), Expect = 3e-46 Identities = 236/317 (74%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 6171 CTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCG-CATCTG 6229 || ||||| || || || || ||| | |||||||| ||||| ||||| || | | || Sbjct 38394 CTTAACGTCAACCGCAACGTTCTCGACCCCTTCTACCGATACAAGATGCCCCGACTTATG 38453 Query 6230 CGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGT 6289 || |||||||| || || |||||||| || || |||||||| | |||||| | || | Sbjct 38454 -GCGAAGGTCGAAGGAAAAGGAAACGGCATCAAGACCGTCATCGCGAACATGGCGGACAT 38512 Query 6290 CGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGG 6349 ||| ||| | || | ||||||| |||||||||||||||| || ||||| |||||||| || Sbjct 38513 CGCGAAGTCCCTGGAACGCCCTCCCACCTACCCGACGAAGTACTTCGGCTGCGAACTCGG 38572 Query 6350 CGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTC 6409 ||| || || | | || |||| |||||||||| |||||| |||||| ||| || | Sbjct 38573 CGCCCAAACCAACATCGACAACAAGAACGAGCGCTACATCGTCAACGGAGAACATGACGC 38632 Query 6410 TGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATG 6469 || ||||| |||||| | || || || || || |||||||| || || || | || Sbjct 38633 CGCGAAGCTCCAGGACATCCTCGATGGATTCATCCGCAAGTTCGTCCTCTGCACCGCTTG 38692 Query 6470 CGATAACCCGGAGACCG 6486 ||| || || ||||||| Sbjct 38693 CGACAATCCTGAGACCG 38709 >seq2162 Length=74254 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || || ||||| ||| |||| || | || || || || |||||||| || Sbjct 49649 CTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGCTTTCCGGCGAA 49590 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || ||||||||||| | ||| | ||||| |||||| || || ||||||||| Sbjct 49589 GATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTCACATT 49530 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 || || | ||| | |||||| || | || || || || || ||||| |||||||| Sbjct 49529 CTCGATCGAATCGGATCCTTCAACCTCGAGAGTGATGGTCTTTCCGGTCAACGTTTTCAC 49470 Query 38306 GAATATCTGCAT 38317 ||| |||||||| Sbjct 49469 GAAGATCTGCAT 49458 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || |||||| |||||| || || || || || ||| || | || || | ||| Sbjct 48845 TGGAGAGTGGACTCCTTCTGGATGTTATAGTCGCTCAAGGTGCGGCCATCCTCCAGTTGC 48786 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 |||||||| || || || ||||||||||| | ||| | ||||||||||| ||| || Sbjct 48785 TTTCCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCTTTGTCTTGAATCTTA 48726 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||| |||| || | || | |||||| || | || || || || || ||| Sbjct 48725 GCTTTCACGTTCTCGATGGAGTCAGATCCTTCAACCTCGAGAGTGATGGTCTTTCCTGTC 48666 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 || ||||||||||| |||||||| Sbjct 48665 AACGTTTTCACGAAGATCTGCAT 48643 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||| | ||| | ||||| ||||| || |||||||| || || || ||| | Sbjct 49097 CCTCCTCGAAGACGGAGGACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTC 49038 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| || | || || | ||| || || ||||| || | || || ||||| | |||| Sbjct 49037 AAAGTGCGGCCATCCTCAAGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGG 48978 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| ||| || || || || | || | ||| | || ||| Sbjct 48977 ATTCCTTCTTTGTCTTGAATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGACT 48918 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || ||||| ||||| | ||| |||||||| |||||||| Sbjct 48917 TCCAATGTGATCGTTTTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 48871 >seq2741 Length=3316 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||| Sbjct 438 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGAATTCGC 379 Query 20007 GGTAATATTTAGCCTT 20022 |||||||||||| Sbjct 378 ATCTATATTTAGCCTT 363 >seq2252 Length=1130325 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| ||| ||||| || || ||||| || |||||| || | || || | || Sbjct 562224 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGC 562283 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 |||||||| || || ||||| || || || | ||||| ||| || || ||| || ||| Sbjct 562284 TTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTT 562343 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| || |||| | || || || || || || | || || || || || ||| Sbjct 562344 GCCTTGACGTTCTCAATGGTGTCCGAACCCTCGACCTCCAGGGTGATGGTCTTTCCGGTC 562403 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 || ||||||||||| |||||||| Sbjct 562404 AAAGTTTTCACGAAGATCTGCAT 562426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334935508667984