Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_008193.1 Length=30505 Score E Sequences producing significant alignments: (Bits) Value seq2600 161 2e-35 >seq2600 Length=29343 Score = 161 bits (178), Expect = 2e-35 Identities = 395/591 (67%), Gaps = 6/591 (1%) Strand=Plus/Minus Query 11117 CCGCCTTTGAGCGCGTCTTCAATTGTGATTACATAGCGCCAAGTGCCGTCAGGACAAAAG 11176 ||||| || | ||| || |||| || |||||||| ||||| || ||||| ||| Sbjct 20074 CCGCCATTTATCGCATCCTCAAGCGTAATTACATATCGCCATTGACCATCAGGGCAATCA 20015 Query 11177 CGCCCGCCGTCGCGTAATTCTTCAAAACTTGGAAAGACCACGTTTGCACGTTTCGGATCG 11236 ||||| || || || ||||| ||||| | ||||| || | ||| ||| | || || Sbjct 20014 CGCCCACCATCCCGCAATTCATCAAACTTAGGAAATACAATTTTTTTACGCTCGGGGTCA 19955 Query 11237 CCCTCTTTCCACATATCGCCAGACCAAAACGCGTAAGACGGGTGAAATTTAGATGACGGC 11296 || ||| || || | |||||| | || | || || ||| | || Sbjct 19954 TTACCTCGCCATTCGTCACCCGTCCAAAATGGATAGGCGGGATGTGTTTTCGCACTGGGA 19895 Query 11297 GTTGAAAAGTACGTTTCACGCCAGTGCTTATGTGTTGCCATTGCTGAAGATACGGTATTG 11356 || ||||| || || ||||| || | ||||||||||||||| || ||||| ||| Sbjct 19894 GTGGAAAAATAAGTCGTTCGCCAATGGTCATGTGTTGCCATTGCAGAGGATACTTCATTA 19835 Query 11357 AATCGCTCAAAATCTCTAATCCAAGCGTATTCGTCGCCGTAAACATGCCCGCTATTCCCT 11416 || | | |||||| | ||| |||||||| | || | ||||||||| | | Sbjct 19834 AACCTTTTAAAATCAGGTACCCAGAAATATTCGTCACAATATAAATGCCCGCTGTAGGAT 19775 Query 11417 TGCGATGTGTTGGCGTTGGTTGCTAAAAAGTGTAATTCCGCGCCATTGCTTAAAATAATC 11476 |||| ||| || ||||| | ||||||| | ||||| || ||||| |||||| || Sbjct 19774 TGCGCTGTATTTTTATTGGTCGATAAAAAGCGCAATTCAGCTCCATTACTTAAACGGATA 19715 Query 11477 GGGCTACCTTTCAATTCGACGTCGAAATA-TGCACGCGCCATTTTGATAATATACGTTTT 11535 || | ||| | || |||| ||||| | | | || || || || | |||||| | Sbjct 19714 GGATTCCCTGTTAAGGTGACGCCGAAAAACTTCTCG-GCAATATTCACAATATAAGACCG 19656 Query 11536 AAAAATTTCGGCTTGTCGTTTAGACGCAGATAAGAATATTTGATTGTCGCCAGTAAAAAT 11595 ||||| |||||| || |||| || || || || || | |||| | ||||| || Sbjct 19655 AAAAACTTCGGCCTGAGGTTTTGATGCGGACAAAAAGAGTTGAGGTTTTCCAGTTAAGCA 19596 Query 11596 CGCGTCTTCTAATGCTTCAAAGGCGAAATAATACGTCGCGCCAATTTGTC-GCGATTTAA 11654 ||| ||||| || |||||||| || ||||| | || || || ||||| | || ||||| Sbjct 19595 CGCATCTTCAAACGCTTCAAACGCAAAATACCAAGTAGCACCGATTTGACGGCTCTTTAA 19536 Query 11655 GAATATTGCGCAC-GCTATGATGTTTATTCGCGCGACAGTGCTTTTGATAG 11704 |||||| ||||| | | | || ||||||| || | || ||||| ||| Sbjct 19535 -AATATTTCGCACTGATTTAGTG-ATATTCGCCCGTAAATGGTTTTGGTAG 19487 Score = 138 bits (152), Expect = 2e-28 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 23413 GTTTATCGCGGAATGATCGCAAAAGTAGCGGGTTTATCCGTTGACCGCATTTATTTTAAA 23472 || |||||||| ||||| ||||| || | || ||| | ||||||| |||| ||| Sbjct 7799 GTATATCGCGGGATGATTGCAAATGTTGTCGGCTTAAGCATTGACCGTATTTTCTTTTTG 7740 Query 23473 CATGACGCGCCACGTGGTCCGGGTACAGCTAATGCGTATTTATTATTGGATACCGGCGTA 23532 ||||| || || || || |||| || ||||| || ||||||||||| || | |||||| Sbjct 7739 CATGATGCCCCTCGCGGGGCGGGAACCGCTAACGCCTATTTATTATTAGACAGCGGCGTC 7680 Query 23533 ACAAGTCAGCCATTTATTGACGTTGTCAACAATTACGTACAAACACAAGGAAATCACGGA 23592 |||||||||| ||||| ||| || || |||| | | | ||||| | || || Sbjct 7679 GCAAGTCAGCCTTTTATCGACAAAGTGAATGATTATATTAATGCGCAAGGCCACCATGGG 7620 Query 23593 CACGGTGACGATTTGATTTGCTATGCAATGCCAGAAACACAGCACA 23638 |||||||| ||| || |||| | | ||||||||||||||||||| Sbjct 7619 CACGGTGATGATATGCAGTGCTTTTCCATGCCAGAAACACAGCACA 7574 Score = 118 bits (130), Expect = 2e-22 Identities = 236/343 (69%), Gaps = 5/343 (1%) Strand=Plus/Minus Query 17398 GGCAATGAAGTTGGCGTGATCGCGGGTCGTTTGC-TAATCGCACGGTGACAGTCGCAGAC 17456 || ||||||| || ||| | || || ||||| ||| || |||| || | || || Sbjct 13577 GGAAATGAAGCGGGTGTGTTAGCAGGCCGTTTATGTAACCGTGCGGTCACCATTGCCGAT 13518 Query 17457 AGTCCGGCGCGCGTATTAACCGGCGCACTGATTGACTTAGGCAACGCACAAAAGCCGAAG 17516 ||||| || || || ||| || || | |||| ||||||| | | |||||||| Sbjct 13517 AGTCCAGCTCGGGTTAAAACAGGTGCTTTACTTGATTTAGGCAGTGTTGATAAGCCGAAA 13458 Query 17517 GATAAAGAAGGTACTTCACTTGACTT-GTCACACTTGAAAACGCTTGAGCAAGCGCGCTA 17575 ||| ||| | |||| || | ||| |||| | || | || || || || Sbjct 13457 GATGGTAGCGGTGTGGAAATTGATTTAGCCAC-CTTGCAGGCGTTGGAAAAACTCCGTTA 13399 Query 17576 TTCGGTGCCGATGTGGTATCCCGACTATGACGGGTAT-TACTGGGCGGACGGTCGCACGC 17634 | || ||||||||||| |||||||||||| ||||| || ||| | || |||||||| Sbjct 13398 TAGCGTACCGATGTGGTACCCCGACTATGAC-GGTATGTATTGGTCTGATGGTCGCACCT 13340 Query 17635 TTGATGTAGAGGGCGGCGATTATCAAGTGATCGAAAACGTTCGCGTAGTTGACAAAGTGG 17694 | ||||| ||||| || |||| ||||| ||| |||||| | ||| | || || ||||| | Sbjct 13339 TAGATGTTGAGGGTGGTGATTTTCAAGCGATTGAAAACCTGCGCATTGTCGATAAAGTCG 13280 Query 17695 CGCGGCCGGTTCGCTTGTTAGCGATTCAAAAAATCGCGGATCG 17737 |||| | ||||||||| || ||| ||||| || || || Sbjct 13279 CGCGTCGCGTTCGCTTGCAGGCTATTGCTAAAATTGCAGACCG 13237 Score = 80.6 bits (88), Expect = 5e-11 Identities = 92/120 (77%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1274 GAAATGTGC--ATACTTCATTGTCATTTCAATTGTTGAGTGTCCGAGAATCTCTTT-TAA 1330 |||| |||| |||| ||||||||||| || | |||||| || || ||||| ||| Sbjct 29028 GAAAAGTGCGAATACCGCATTGTCATTTTTATATCGGTGTGTCCTAGTAT-TCTTTGTAA 28970 Query 1331 TACTAAAATGTTTCCCCCGTTCATCATAAAATGACTGGCGAAAGTATGGCGTAAAACGTG 1390 ||||| || ||||| ||| ||||||||| ||| ||||||||||| |||||||| || Sbjct 28969 AACTAATATATTTCCACCGGACATCATAAAGTGAGAAGCGAAAGTATGACGTAAAACATG 28910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97491084215456